Wall clock time and date at job start Thu Apr 9 2020 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99877 * 2 1 4 4 C 1.46896 * 111.00372 * 123.96105 * 2 1 3 5 5 C 1.53932 * 113.73385 * 164.73138 * 4 2 1 6 6 N 1.47960 * 86.17912 * 221.91860 * 5 4 2 7 7 C 1.46903 * 111.00009 * 137.58412 * 6 5 4 8 8 C 1.50703 * 109.47207 * 70.63710 * 7 6 5 9 9 H 1.07997 * 119.99845 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99897 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00352 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99988 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.46598 * 90.00342 * 12 10 8 14 14 H 1.48497 * 109.47249 * 210.00233 * 12 10 8 15 15 H 1.48502 * 109.47120 * 330.00726 * 12 10 8 16 16 C 1.47953 * 90.76280 * 24.68913 * 6 5 4 17 17 H 1.08995 * 109.47363 * 59.99568 * 1 2 3 18 18 H 1.09001 * 109.46668 * 299.99551 * 1 2 3 19 19 H 1.09002 * 109.47280 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47102 * 59.74056 * 3 2 1 21 21 H 1.09002 * 109.46937 * 179.73333 * 3 2 1 22 22 H 1.09000 * 109.47592 * 299.73670 * 3 2 1 23 23 H 1.09004 * 112.93446 * 296.43182 * 4 2 1 24 24 H 1.09000 * 113.75815 * 336.23679 * 5 4 2 25 25 H 1.09002 * 113.76094 * 107.60498 * 5 4 2 26 26 H 1.08999 * 109.47262 * 190.64244 * 7 6 5 27 27 H 1.09001 * 109.46733 * 310.63753 * 7 6 5 28 28 H 0.96992 * 120.00479 * 179.97438 * 11 10 8 29 29 H 1.09007 * 113.75820 * 220.99058 * 16 6 5 30 30 H 1.09008 * 113.76170 * 89.63008 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1374 5 6 3.4867 -1.1248 1.0057 6 7 3.1109 -2.4563 1.5304 7 6 3.7951 -3.5256 0.7911 8 6 5.2622 -3.5153 1.1356 9 1 5.6477 -2.7874 1.8341 10 6 6.1120 -4.4357 0.5598 11 7 5.6424 -5.3224 -0.2905 12 14 7.9306 -4.4224 0.9862 13 1 8.1709 -5.3038 2.1570 14 1 8.7148 -4.9160 -0.1742 15 1 8.3519 -3.0368 1.3150 16 6 1.7249 -2.2785 1.0443 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 1.6421 1.8962 0.8877 21 1 3.0850 1.3423 0.0048 22 1 1.6498 1.8933 -0.8923 23 1 1.7306 -0.3315 2.1013 24 1 3.8446 -1.1434 -0.0237 25 1 4.1355 -0.5571 1.6727 26 1 3.3645 -4.4890 1.0642 27 1 3.6721 -3.3631 -0.2797 28 1 6.2403 -5.9697 -0.6959 29 1 0.9660 -2.6327 1.7420 30 1 1.5674 -2.6346 0.0261 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261022041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:05 Heat of formation + Delta-G solvation = 39.474840 kcal Electronic energy + Delta-G solvation = -11380.404728 eV Core-core repulsion = 9404.878798 eV Total energy + Delta-G solvation = -1975.525930 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.33565 -35.67468 -32.73005 -29.05001 -27.69009 -25.56224 -24.91173 -23.10686 -20.70962 -18.92259 -16.39589 -15.72021 -15.28660 -14.68559 -14.34510 -14.03191 -13.06405 -12.85778 -12.25996 -12.16626 -11.92553 -11.54167 -11.53235 -11.12764 -10.89973 -10.56840 -10.27141 -10.03863 -9.55873 -9.10539 -8.43985 -8.18720 -7.69527 -6.00539 -4.02140 3.33968 3.39401 3.43459 4.14103 4.45796 4.88398 5.00524 5.30548 5.35334 5.44918 5.49781 5.65916 5.72345 5.93031 5.97357 6.04950 6.24801 6.26673 6.50263 6.61449 6.78766 7.18924 7.30642 7.36962 7.69597 7.94318 8.19197 8.48558 9.05212 9.61950 11.10808 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.071804 B = 0.009089 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.859119 B = 3079.986469 C = 3249.375818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.539 5.539 3 C 0.026 3.974 4 C 0.040 3.960 5 C 0.035 3.965 6 N -0.480 5.480 7 C 0.163 3.837 8 C -0.509 4.509 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.898 3.102 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.010 3.990 17 H 0.063 0.937 18 H 0.021 0.979 19 H 0.068 0.932 20 H 0.021 0.979 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.001 0.999 28 H 0.261 0.739 29 H 0.072 0.928 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 10.049 0.545 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.263 5.263 3 C -0.122 4.122 4 C -0.068 4.068 5 C -0.094 4.094 6 N -0.204 5.204 7 C 0.037 3.963 8 C -0.548 4.548 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.726 3.274 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.119 4.119 17 H 0.082 0.918 18 H 0.039 0.961 19 H 0.087 0.913 20 H 0.039 0.961 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.018 0.982 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.279 9.477 0.683 11.969 hybrid contribution 0.619 0.355 -0.002 0.714 sum -6.659 9.832 0.680 11.894 Atomic orbital electron populations 1.22314 0.87916 1.02070 0.99917 1.62272 1.07497 1.13611 1.42933 1.22315 1.01152 0.88840 0.99896 1.23813 0.97629 0.93944 0.91439 1.23660 0.93089 0.92709 0.99985 1.68509 1.01004 1.03112 1.47755 1.20186 0.94413 0.90162 0.91583 1.21105 0.92208 1.15916 1.25537 0.92071 1.24995 0.99055 0.95439 0.95103 1.69959 1.35427 1.18742 1.29616 0.86492 0.84756 0.78293 0.77835 1.20617 1.21267 1.19870 1.23877 0.95252 0.93144 0.99677 0.91821 0.96078 0.91310 0.96068 0.91125 0.91807 0.91739 0.90751 0.90962 0.95112 0.98151 0.92919 0.90940 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.51 60.06 0.57 0.90 16 2 N -0.54 -8.11 4.96 -244.62 -1.21 -9.33 16 3 C 0.03 0.33 9.53 60.06 0.57 0.91 16 4 C 0.04 0.68 3.34 -69.42 -0.23 0.45 16 5 C 0.04 0.71 6.56 -2.77 -0.02 0.69 16 6 N -0.48 -10.99 6.25 -239.90 -1.50 -12.49 16 7 C 0.16 4.43 4.58 -4.97 -0.02 4.41 16 8 C -0.51 -14.82 8.84 -34.44 -0.30 -15.12 16 9 H 0.06 1.77 7.80 -52.49 -0.41 1.36 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 12 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.01 0.19 6.91 -2.77 -0.02 0.17 16 17 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 18 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 19 H 0.07 0.85 7.47 -51.93 -0.39 0.46 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 21 H 0.07 0.92 7.59 -51.93 -0.39 0.53 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 1.62 7.78 -51.93 -0.40 1.21 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.00 0.02 7.69 -51.93 -0.40 -0.38 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.07 1.37 7.79 -51.92 -0.40 0.96 16 LS Contribution 249.65 15.07 3.76 3.76 Total: -1.00 -30.69 249.65 -7.70 -38.39 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.92 Total: -4.76 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 0.45 Total: -6.08 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -1.98 Total: -48.37 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.69 -7.70 -38.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.868 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds