Wall clock time and date at job start Thu Apr 9 2020 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99877 * 2 1 4 4 C 1.46896 * 111.00372 * 123.96105 * 2 1 3 5 5 C 1.53932 * 113.73385 * 164.73138 * 4 2 1 6 6 N 1.47960 * 86.17912 * 221.91860 * 5 4 2 7 7 C 1.46903 * 111.00009 * 137.58412 * 6 5 4 8 8 C 1.50703 * 109.47207 * 70.63710 * 7 6 5 9 9 H 1.07997 * 119.99845 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99897 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00352 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99988 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.46598 * 90.00342 * 12 10 8 14 14 H 1.48497 * 109.47249 * 210.00233 * 12 10 8 15 15 H 1.48502 * 109.47120 * 330.00726 * 12 10 8 16 16 C 1.47953 * 90.76280 * 24.68913 * 6 5 4 17 17 H 1.08995 * 109.47363 * 59.99568 * 1 2 3 18 18 H 1.09001 * 109.46668 * 299.99551 * 1 2 3 19 19 H 1.09002 * 109.47280 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47102 * 59.74056 * 3 2 1 21 21 H 1.09002 * 109.46937 * 179.73333 * 3 2 1 22 22 H 1.09000 * 109.47592 * 299.73670 * 3 2 1 23 23 H 1.09004 * 112.93446 * 296.43182 * 4 2 1 24 24 H 1.09000 * 113.75815 * 336.23679 * 5 4 2 25 25 H 1.09002 * 113.76094 * 107.60498 * 5 4 2 26 26 H 1.08999 * 109.47262 * 190.64244 * 7 6 5 27 27 H 1.09001 * 109.46733 * 310.63753 * 7 6 5 28 28 H 0.96992 * 120.00479 * 179.97438 * 11 10 8 29 29 H 1.09007 * 113.75820 * 220.99058 * 16 6 5 30 30 H 1.09008 * 113.76170 * 89.63008 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1374 5 6 3.4867 -1.1248 1.0057 6 7 3.1109 -2.4563 1.5304 7 6 3.7951 -3.5256 0.7911 8 6 5.2622 -3.5153 1.1356 9 1 5.6477 -2.7874 1.8341 10 6 6.1120 -4.4357 0.5598 11 7 5.6424 -5.3224 -0.2905 12 14 7.9306 -4.4224 0.9862 13 1 8.1709 -5.3038 2.1570 14 1 8.7148 -4.9160 -0.1742 15 1 8.3519 -3.0368 1.3150 16 6 1.7249 -2.2785 1.0443 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 1.6421 1.8962 0.8877 21 1 3.0850 1.3423 0.0048 22 1 1.6498 1.8933 -0.8923 23 1 1.7306 -0.3315 2.1013 24 1 3.8446 -1.1434 -0.0237 25 1 4.1355 -0.5571 1.6727 26 1 3.3645 -4.4890 1.0642 27 1 3.6721 -3.3631 -0.2797 28 1 6.2403 -5.9697 -0.6959 29 1 0.9660 -2.6327 1.7420 30 1 1.5674 -2.6346 0.0261 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261022041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:05 Heat of formation + Delta-G solvation = 15.393419 kcal Electronic energy + Delta-G solvation = -11381.448977 eV Core-core repulsion = 9404.878798 eV Total energy + Delta-G solvation = -1976.570179 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.90017 -37.00764 -34.89859 -30.98551 -28.76524 -27.36121 -26.45773 -24.68613 -22.44812 -20.41220 -18.57108 -17.25516 -16.86180 -16.23507 -15.95481 -15.30402 -14.77650 -14.46749 -13.93944 -13.67795 -13.39047 -13.08281 -12.85397 -12.65926 -12.53625 -12.34049 -12.24780 -11.59001 -11.40396 -11.15714 -10.65466 -9.58452 -9.29101 -8.24022 -6.35283 1.39303 1.41607 1.52791 2.38593 2.94474 3.08885 3.38581 3.46543 4.11306 4.26757 4.47633 4.50239 4.61668 4.69026 4.73291 4.75619 4.81608 4.94318 5.00331 5.04857 5.06071 5.20796 5.51751 5.76930 6.11397 6.12509 6.15347 6.40898 6.79647 7.34637 8.87969 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.071804 B = 0.009089 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.859119 B = 3079.986469 C = 3249.375818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.026 3.974 4 C 0.069 3.931 5 C 0.032 3.968 6 N -0.497 5.497 7 C 0.180 3.820 8 C -0.531 4.531 9 H 0.060 0.940 10 C 0.001 3.999 11 N -0.934 5.934 12 Si 0.973 3.027 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.264 1.264 16 C 0.010 3.990 17 H 0.080 0.920 18 H 0.035 0.965 19 H 0.064 0.936 20 H 0.035 0.965 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.001 0.999 27 H -0.028 1.028 28 H 0.266 0.734 29 H 0.093 0.907 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 11.464 1.152 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.122 4.122 4 C -0.040 4.040 5 C -0.097 4.097 6 N -0.220 5.220 7 C 0.053 3.947 8 C -0.569 4.569 9 H 0.078 0.922 10 C -0.197 4.197 11 N -0.574 5.574 12 Si 0.797 3.203 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.188 1.188 16 C -0.119 4.119 17 H 0.099 0.901 18 H 0.054 0.946 19 H 0.082 0.918 20 H 0.054 0.946 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.019 0.981 27 H -0.010 1.010 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.298 10.913 1.294 13.192 hybrid contribution 0.542 -0.060 -0.220 0.588 sum -6.756 10.853 1.074 12.829 Atomic orbital electron populations 1.22371 0.85957 1.02341 1.01468 1.62201 1.09370 1.14980 1.41932 1.22363 1.00602 0.87686 1.01499 1.23449 0.94586 0.92952 0.92991 1.23627 0.95927 0.91475 0.98697 1.68420 1.03037 1.03054 1.47479 1.19820 0.94310 0.90418 0.90188 1.21409 0.93346 1.16266 1.25846 0.92174 1.25974 1.04341 0.94738 0.94674 1.70088 1.37418 1.19382 1.30474 0.85330 0.78256 0.78826 0.77890 1.19684 1.20451 1.18810 1.23920 0.93452 0.95164 0.99372 0.90091 0.94641 0.91759 0.94602 0.92105 0.90009 0.90063 0.92940 0.90244 0.98102 1.01031 0.92541 0.88902 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.51 127.69 1.21 1.79 16 2 N -0.56 -15.72 4.96 -927.82 -4.60 -20.33 16 3 C 0.03 0.60 9.53 127.69 1.22 1.82 16 4 C 0.07 2.23 3.34 46.48 0.16 2.38 16 5 C 0.03 1.29 6.56 86.40 0.57 1.86 16 6 N -0.50 -22.97 6.25 -912.92 -5.71 -28.68 16 7 C 0.18 10.16 4.58 85.56 0.39 10.55 16 8 C -0.53 -31.44 8.84 25.60 0.23 -31.21 16 9 H 0.06 3.49 7.80 -2.91 -0.02 3.47 16 10 C 0.00 0.05 5.46 84.65 0.46 0.52 16 11 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 12 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 15 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 16 C 0.01 0.38 6.91 86.41 0.60 0.98 16 17 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 18 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 19 H 0.06 1.46 7.47 -2.39 -0.02 1.44 16 20 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 21 H 0.06 1.49 7.59 -2.39 -0.02 1.48 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.05 2.34 7.78 -2.39 -0.02 2.32 16 25 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 H -0.03 -1.70 7.69 -2.39 -0.02 -1.72 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 30 H 0.06 2.28 7.79 -2.38 -0.02 2.26 16 Total: -1.00 -66.11 249.65 -2.09 -68.20 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 1.08 Total: 2.28 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.83 Total: -11.32 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -10.03 Total: -106.45 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -66.11 -2.09 -68.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.590 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds