Wall clock time and date at job start Thu Apr 9 2020 13:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99593 * 2 1 4 4 H 1.08997 * 109.47354 * 34.69290 * 3 2 1 5 5 C 1.50699 * 109.47352 * 274.69209 * 3 2 1 6 6 H 1.08003 * 119.99536 * 335.41593 * 5 3 2 7 7 C 1.37879 * 120.00540 * 155.41625 * 5 3 2 8 8 N 1.31511 * 120.00204 * 174.73626 * 7 5 3 9 9 Si 1.86798 * 119.99440 * 354.72940 * 7 5 3 10 10 H 1.48502 * 109.46882 * 94.14957 * 9 7 5 11 11 H 1.48504 * 109.47226 * 214.14349 * 9 7 5 12 12 H 1.48496 * 109.47447 * 334.14544 * 9 7 5 13 13 C 1.52995 * 109.47151 * 154.69260 * 3 2 1 14 14 C 1.54270 * 110.03427 * 57.16388 * 13 3 2 15 15 C 1.54885 * 104.19852 * 217.11103 * 14 13 3 16 16 C 1.54889 * 102.75031 * 37.93993 * 15 14 13 17 17 C 1.53878 * 110.03333 * 300.00172 * 13 3 2 18 18 H 1.09001 * 109.46927 * 175.04526 * 1 2 3 19 19 H 1.08994 * 109.47592 * 55.04140 * 1 2 3 20 20 H 1.09000 * 109.47132 * 295.04142 * 1 2 3 21 21 H 0.96998 * 119.99971 * 180.02562 * 8 7 5 22 22 H 1.08997 * 110.02389 * 178.60745 * 13 3 2 23 23 H 1.09004 * 110.48031 * 335.79094 * 14 13 3 24 24 H 1.09002 * 110.48298 * 98.42481 * 14 13 3 25 25 H 1.09007 * 110.75118 * 279.62690 * 15 14 13 26 26 H 1.09000 * 110.91665 * 156.33156 * 15 14 13 27 27 H 1.09006 * 110.48423 * 203.38441 * 16 15 14 28 28 H 1.08994 * 110.59758 * 80.79664 * 16 15 14 29 29 H 1.08995 * 110.03005 * 238.56971 * 17 13 3 30 30 H 1.09002 * 110.02952 * 359.97438 * 17 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3860 1.9811 0.5849 5 6 2.1083 1.8117 -1.4160 6 1 2.1505 1.1122 -2.2378 7 6 2.1443 3.1678 -1.6625 8 7 2.3339 3.6088 -2.8869 9 14 1.9235 4.3786 -0.2573 10 1 3.2547 4.7790 0.2649 11 1 1.2024 5.5805 -0.7481 12 1 1.1378 3.7390 0.8284 13 6 3.4089 1.2411 0.6166 14 6 4.2827 0.2340 -0.1593 15 6 5.1416 -0.4462 0.9355 16 6 4.1485 -0.5772 2.1169 17 6 3.3237 0.7254 2.0639 18 1 -0.3633 -1.0238 -0.0888 19 1 -0.3634 0.5888 -0.8422 20 1 -0.3633 0.4350 0.9311 21 1 2.3595 4.5629 -3.0602 22 1 3.8705 2.2283 0.5986 23 1 3.6580 -0.5017 -0.6661 24 1 4.9190 0.7536 -0.8756 25 1 5.9875 0.1842 1.2099 26 1 5.4837 -1.4279 0.6077 27 1 4.6872 -0.6494 3.0618 28 1 3.5021 -1.4440 1.9801 29 1 3.7446 1.4620 2.7481 30 1 2.2858 0.5214 2.3271 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261119645.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:06 Heat of formation + Delta-G solvation = -66.441710 kcal Electronic energy + Delta-G solvation = -11913.492417 eV Core-core repulsion = 9901.080850 eV Total energy + Delta-G solvation = -2012.411567 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.13534 -35.72111 -32.60421 -29.84376 -27.96743 -25.90454 -25.55326 -21.52939 -20.01806 -18.74434 -16.89184 -15.69151 -14.95846 -14.44429 -14.30965 -13.50590 -13.12890 -12.58702 -12.46998 -12.03809 -11.50944 -11.09570 -10.76620 -10.51448 -10.37732 -10.27820 -10.10028 -9.92377 -9.60092 -9.50552 -9.24031 -8.60124 -8.11268 -6.11652 -4.11297 3.22853 3.30889 3.32023 4.35310 4.98148 5.15118 5.34398 5.44032 5.51977 6.07962 6.12394 6.20950 6.22778 6.25696 6.31286 6.41296 6.51584 6.52033 6.53795 6.66565 6.87849 6.94753 7.17339 7.25849 7.37284 7.64938 8.26169 8.59640 9.01022 9.52538 11.01679 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.037646 B = 0.016740 C = 0.015028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.597571 B = 1672.257319 C = 1862.712851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.391 6.391 3 C 0.182 3.818 4 H 0.022 0.978 5 C -0.527 4.527 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.862 3.138 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.261 1.261 13 C -0.082 4.082 14 C -0.094 4.094 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.122 4.122 18 H 0.063 0.937 19 H 0.043 0.957 20 H 0.019 0.981 21 H 0.264 0.736 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 -4.748 8.562 9.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.310 6.310 3 C 0.126 3.874 4 H 0.040 0.960 5 C -0.565 4.565 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.690 3.310 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.186 1.186 13 C -0.101 4.101 14 C -0.132 4.132 15 C -0.166 4.166 16 C -0.154 4.154 17 C -0.160 4.160 18 H 0.082 0.918 19 H 0.061 0.939 20 H 0.038 0.962 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.210 -4.733 8.444 9.755 hybrid contribution -0.308 1.149 0.609 1.336 sum 0.902 -3.585 9.053 9.778 Atomic orbital electron populations 1.22433 0.83527 1.00343 0.99082 1.87688 1.17535 1.30590 1.95187 1.20349 0.89896 0.81178 0.96009 0.96039 1.21498 1.50348 0.92536 0.92131 0.90290 1.24950 0.94491 0.98126 0.95222 1.69911 1.49565 1.14367 1.19544 0.87034 0.79151 0.81339 0.83481 1.19914 1.21175 1.18597 1.22029 0.97353 0.98389 0.92337 1.22079 0.96785 0.97949 0.96337 1.22555 0.97668 0.99692 0.96708 1.22257 0.97529 0.98305 0.97278 1.22240 0.99751 0.96331 0.97677 0.91793 0.93857 0.96199 0.92628 0.91640 0.90764 0.92357 0.92606 0.92616 0.93219 0.91873 0.93482 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.80 101.05 1.09 1.94 16 2 O -0.39 -8.94 8.80 -35.23 -0.31 -9.25 16 3 C 0.18 4.42 1.20 -27.89 -0.03 4.39 16 4 H 0.02 0.54 5.07 -51.93 -0.26 0.28 16 5 C -0.53 -14.83 8.37 -34.44 -0.29 -15.12 16 6 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 9 Si 0.86 21.17 26.57 -169.99 -4.52 16.66 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.26 -6.14 5.93 56.52 0.34 -5.81 16 13 C -0.08 -1.79 2.65 -89.50 -0.24 -2.02 16 14 C -0.09 -1.93 5.67 -25.07 -0.14 -2.07 16 15 C -0.13 -2.14 6.91 -24.74 -0.17 -2.31 16 16 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 17 C -0.12 -2.25 6.22 -25.61 -0.16 -2.41 16 18 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 19 H 0.04 0.89 7.96 -51.93 -0.41 0.48 16 20 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.07 1.49 7.06 -51.93 -0.37 1.12 16 23 H 0.07 1.64 7.12 -51.93 -0.37 1.27 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.12 7.42 -51.93 -0.39 0.73 16 LS Contribution 239.71 15.07 3.61 3.61 Total: -1.00 -29.58 239.71 -5.45 -35.03 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.80 Total: -1.99 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.21 Total: -17.65 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.31 Total: -9.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.52 Total: 16.66 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.58 -5.45 -35.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119645.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.411 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds