Wall clock time and date at job start Thu Apr 9 2020 13:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99593 * 2 1 4 4 H 1.08997 * 109.47354 * 34.69290 * 3 2 1 5 5 C 1.50699 * 109.47352 * 274.69209 * 3 2 1 6 6 H 1.08003 * 119.99536 * 335.41593 * 5 3 2 7 7 C 1.37879 * 120.00540 * 155.41625 * 5 3 2 8 8 N 1.31511 * 120.00204 * 174.73626 * 7 5 3 9 9 Si 1.86798 * 119.99440 * 354.72940 * 7 5 3 10 10 H 1.48502 * 109.46882 * 94.14957 * 9 7 5 11 11 H 1.48504 * 109.47226 * 214.14349 * 9 7 5 12 12 H 1.48496 * 109.47447 * 334.14544 * 9 7 5 13 13 C 1.52995 * 109.47151 * 154.69260 * 3 2 1 14 14 C 1.54270 * 110.03427 * 57.16388 * 13 3 2 15 15 C 1.54885 * 104.19852 * 217.11103 * 14 13 3 16 16 C 1.54889 * 102.75031 * 37.93993 * 15 14 13 17 17 C 1.53878 * 110.03333 * 300.00172 * 13 3 2 18 18 H 1.09001 * 109.46927 * 175.04526 * 1 2 3 19 19 H 1.08994 * 109.47592 * 55.04140 * 1 2 3 20 20 H 1.09000 * 109.47132 * 295.04142 * 1 2 3 21 21 H 0.96998 * 119.99971 * 180.02562 * 8 7 5 22 22 H 1.08997 * 110.02389 * 178.60745 * 13 3 2 23 23 H 1.09004 * 110.48031 * 335.79094 * 14 13 3 24 24 H 1.09002 * 110.48298 * 98.42481 * 14 13 3 25 25 H 1.09007 * 110.75118 * 279.62690 * 15 14 13 26 26 H 1.09000 * 110.91665 * 156.33156 * 15 14 13 27 27 H 1.09006 * 110.48423 * 203.38441 * 16 15 14 28 28 H 1.08994 * 110.59758 * 80.79664 * 16 15 14 29 29 H 1.08995 * 110.03005 * 238.56971 * 17 13 3 30 30 H 1.09002 * 110.02952 * 359.97438 * 17 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3860 1.9811 0.5849 5 6 2.1083 1.8117 -1.4160 6 1 2.1505 1.1122 -2.2378 7 6 2.1443 3.1678 -1.6625 8 7 2.3339 3.6088 -2.8869 9 14 1.9235 4.3786 -0.2573 10 1 3.2547 4.7790 0.2649 11 1 1.2024 5.5805 -0.7481 12 1 1.1378 3.7390 0.8284 13 6 3.4089 1.2411 0.6166 14 6 4.2827 0.2340 -0.1593 15 6 5.1416 -0.4462 0.9355 16 6 4.1485 -0.5772 2.1169 17 6 3.3237 0.7254 2.0639 18 1 -0.3633 -1.0238 -0.0888 19 1 -0.3634 0.5888 -0.8422 20 1 -0.3633 0.4350 0.9311 21 1 2.3595 4.5629 -3.0602 22 1 3.8705 2.2283 0.5986 23 1 3.6580 -0.5017 -0.6661 24 1 4.9190 0.7536 -0.8756 25 1 5.9875 0.1842 1.2099 26 1 5.4837 -1.4279 0.6077 27 1 4.6872 -0.6494 3.0618 28 1 3.5021 -1.4440 1.9801 29 1 3.7446 1.4620 2.7481 30 1 2.2858 0.5214 2.3271 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261119645.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:06 Heat of formation + Delta-G solvation = -85.405413 kcal Electronic energy + Delta-G solvation = -11914.314745 eV Core-core repulsion = 9901.080850 eV Total energy + Delta-G solvation = -2013.233895 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.80790 -37.35280 -34.75753 -31.62207 -29.44251 -27.76827 -27.20949 -23.43959 -21.43451 -20.41014 -18.99138 -17.52564 -16.55255 -16.21465 -15.97045 -15.19207 -14.91629 -14.42163 -14.01874 -13.75531 -13.25114 -12.98783 -12.48267 -12.08049 -11.96250 -11.83739 -11.71820 -11.49510 -11.27523 -11.24540 -11.05612 -10.74150 -10.01732 -8.33648 -6.38584 1.28864 1.30487 1.39594 2.27929 2.98686 3.28286 3.89709 4.01313 4.07914 4.53381 4.64595 4.66909 4.71580 4.78350 4.83734 4.92545 4.95668 5.04440 5.12443 5.22883 5.24999 5.42263 5.47268 5.61356 5.68232 5.72485 6.15477 6.56877 6.79069 7.30755 8.83775 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.037646 B = 0.016740 C = 0.015028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.597571 B = 1672.257319 C = 1862.712851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.401 6.401 3 C 0.189 3.811 4 H 0.022 0.978 5 C -0.530 4.530 6 H 0.028 0.972 7 C 0.017 3.983 8 N -0.945 5.945 9 Si 0.927 3.073 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.241 1.241 13 C -0.090 4.090 14 C -0.097 4.097 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.119 4.119 18 H 0.096 0.904 19 H 0.021 0.979 20 H 0.041 0.959 21 H 0.267 0.733 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -4.994 11.523 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.321 6.321 3 C 0.131 3.869 4 H 0.040 0.960 5 C -0.569 4.569 6 H 0.046 0.954 7 C -0.180 4.180 8 N -0.585 5.585 9 Si 0.751 3.249 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.164 1.164 13 C -0.109 4.109 14 C -0.135 4.135 15 C -0.157 4.157 16 C -0.147 4.147 17 C -0.156 4.156 18 H 0.115 0.885 19 H 0.040 0.960 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.449 -5.004 11.417 12.549 hybrid contribution -0.429 1.141 -0.432 1.293 sum 1.020 -3.864 10.984 11.688 Atomic orbital electron populations 1.22672 0.81739 1.02380 0.99268 1.87672 1.19551 1.29694 1.95134 1.20223 0.91618 0.81659 0.93352 0.96021 1.21680 1.49957 0.92043 0.93176 0.95397 1.25807 0.94087 1.00145 0.97997 1.70064 1.51300 1.15000 1.22150 0.86001 0.79951 0.78593 0.80385 1.18530 1.20790 1.16439 1.22005 0.95511 0.98315 0.95026 1.22025 0.96841 0.97406 0.97218 1.22514 0.97553 1.00370 0.95218 1.22242 0.97146 0.96916 0.98409 1.22205 1.00416 0.97948 0.95066 0.88528 0.95996 0.94016 0.92414 0.92846 0.93186 0.94457 0.91067 0.90908 0.89936 0.92011 0.91409 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.80 113.37 1.22 2.58 16 2 O -0.40 -18.15 8.80 -148.98 -1.31 -19.46 16 3 C 0.19 9.08 1.20 29.85 0.04 9.12 16 4 H 0.02 1.06 5.07 -2.39 -0.01 1.04 16 5 C -0.53 -30.89 8.37 25.60 0.21 -30.68 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.02 1.01 5.47 84.66 0.46 1.47 16 8 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 9 Si 0.93 43.41 26.57 68.60 1.82 45.24 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.24 -10.39 5.93 99.48 0.59 -9.80 16 13 C -0.09 -3.80 2.65 -10.07 -0.03 -3.82 16 14 C -0.10 -3.99 5.67 31.67 0.18 -3.81 16 15 C -0.12 -3.63 6.91 31.88 0.22 -3.41 16 16 C -0.11 -3.11 6.83 31.67 0.22 -2.90 16 17 C -0.12 -3.97 6.22 31.32 0.19 -3.78 16 18 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 19 H 0.02 0.89 7.96 -2.39 -0.02 0.87 16 20 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 22 H 0.05 2.36 7.06 -2.39 -0.02 2.35 16 23 H 0.05 2.25 7.12 -2.39 -0.02 2.24 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.96 7.42 -2.39 -0.02 1.94 16 Total: -1.00 -65.50 239.71 4.50 -61.00 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.97 Total: 7.49 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 2.72 Total: -35.22 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.30 Total: -59.04 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -1.31 Total: -19.46 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.82 Total: 45.24 kcal Total: -65.50 4.50 -61.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119645.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.409 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds