Wall clock time and date at job start Thu Apr 9 2020 13:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47099 * 2 1 4 4 C 1.42902 * 114.00057 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.01399 * 331.38826 * 4 3 2 6 6 C 1.53877 * 110.03309 * 92.83536 * 4 3 2 7 7 C 1.54269 * 106.59921 * 119.28788 * 6 4 3 8 8 C 1.54890 * 104.19827 * 23.60452 * 7 6 4 9 9 H 1.08999 * 110.91229 * 80.44460 * 8 7 6 10 10 C 1.50695 * 110.75741 * 203.74817 * 8 7 6 11 11 H 1.07995 * 120.00496 * 113.33004 * 10 8 7 12 12 C 1.37880 * 119.99572 * 293.32937 * 10 8 7 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.54271 * 110.03350 * 210.00065 * 4 3 2 19 19 H 1.09004 * 109.47050 * 60.00440 * 1 2 3 20 20 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47354 * 299.99870 * 1 2 3 22 22 H 1.09005 * 109.47112 * 240.00309 * 2 1 3 23 23 H 1.09001 * 109.47460 * 120.00205 * 2 1 3 24 24 H 1.09006 * 110.02895 * 238.56736 * 6 4 3 25 25 H 1.08994 * 110.03185 * 359.94584 * 6 4 3 26 26 H 1.09004 * 110.47743 * 264.92958 * 7 6 4 27 27 H 1.08992 * 110.48614 * 142.28747 * 7 6 4 28 28 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 29 29 H 1.08998 * 110.48854 * 98.42195 * 18 4 3 30 30 H 1.09002 * 110.59582 * 335.83552 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8739 0.5932 0.4895 6 6 3.9501 1.5732 -1.4447 7 6 4.6755 2.9309 -1.5471 8 6 5.0777 3.2578 -0.0875 9 1 5.9813 2.7186 0.1972 10 6 5.2636 4.7419 0.0956 11 1 4.5870 5.2970 0.7284 12 6 6.2977 5.3913 -0.5447 13 7 7.1215 4.7155 -1.3157 14 14 6.5288 7.2309 -0.3172 15 1 6.7543 7.5275 1.1203 16 1 5.3130 7.9441 -0.7849 17 1 7.7029 7.6837 -1.1057 18 6 3.8589 2.7530 0.7241 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8900 24 1 4.6459 0.7612 -1.6559 25 1 3.1156 1.5411 -2.1451 26 1 4.0026 3.6943 -1.9375 27 1 5.5611 2.8436 -2.1764 28 1 7.0018 3.7601 -1.4335 29 1 4.1485 2.5360 1.7523 30 1 3.0550 3.4888 0.7024 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261164614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:10 Heat of formation + Delta-G solvation = -75.695583 kcal Electronic energy + Delta-G solvation = -11418.662147 eV Core-core repulsion = 9405.849302 eV Total energy + Delta-G solvation = -2012.812846 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.45031 -35.82124 -32.46384 -30.74817 -28.12343 -26.60234 -23.65892 -22.66046 -19.67374 -19.44889 -17.02108 -16.23556 -15.24386 -14.60253 -14.21337 -13.69604 -12.75305 -12.62380 -12.39479 -12.26406 -11.83121 -11.17457 -10.90149 -10.81962 -10.64305 -10.44745 -10.03974 -9.87896 -9.70306 -9.42100 -9.01261 -8.41036 -8.28505 -6.27972 -3.99105 3.47635 3.49400 3.67961 4.07585 4.58781 5.12431 5.25270 5.38319 5.43606 5.54585 5.58101 5.67438 5.74491 5.97927 6.07686 6.16986 6.42417 6.51674 6.58927 6.72862 6.86301 7.00067 7.10383 7.37929 7.66766 7.80694 8.31619 8.50746 8.94949 9.72456 11.10196 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.083933 B = 0.008991 C = 0.008555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.521310 B = 3113.539651 C = 3272.292679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.383 6.383 4 C 0.084 3.916 5 H 0.050 0.950 6 C -0.146 4.146 7 C -0.113 4.113 8 C 0.034 3.966 9 H 0.023 0.977 10 C -0.591 4.591 11 H 0.049 0.951 12 C 0.018 3.982 13 N -0.915 5.915 14 Si 1.067 2.933 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.283 1.283 18 C -0.105 4.105 19 H 0.061 0.939 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.271 0.729 29 H 0.051 0.949 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 -7.690 1.584 11.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.303 6.303 4 C 0.027 3.973 5 H 0.068 0.932 6 C -0.184 4.184 7 C -0.151 4.151 8 C 0.016 3.984 9 H 0.042 0.958 10 C -0.630 4.630 11 H 0.068 0.932 12 C -0.185 4.185 13 N -0.552 5.552 14 Si 0.896 3.104 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.209 1.209 18 C -0.143 4.143 19 H 0.080 0.920 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.407 -6.250 1.140 9.758 hybrid contribution -0.835 -1.666 0.400 1.906 sum -8.241 -7.916 1.539 11.531 Atomic orbital electron populations 1.21731 0.94343 1.01621 1.02991 1.22409 0.95146 0.85199 0.99438 1.87977 1.22289 1.24993 1.95027 1.22997 0.79341 0.98878 0.96122 0.93188 1.22716 0.99604 0.99807 0.96296 1.22506 0.98486 0.93317 1.00787 1.19712 0.91854 0.96674 0.90203 0.95847 1.21943 1.16052 0.92617 1.32339 0.93247 1.25789 0.92787 1.06481 0.93490 1.70796 1.37773 1.10447 1.36137 0.83574 0.76182 0.74592 0.76099 1.21518 1.21491 1.20857 1.22456 0.99815 0.94289 0.97695 0.91997 0.91650 0.92012 0.93955 0.94007 0.92931 0.92267 0.92487 0.92688 0.91728 0.93061 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.34 16 2 C 0.06 0.77 6.50 37.16 0.24 1.02 16 3 O -0.38 -7.09 9.90 -35.23 -0.35 -7.44 16 4 C 0.08 1.62 3.39 -25.61 -0.09 1.54 16 5 H 0.05 0.88 7.80 -51.93 -0.41 0.48 16 6 C -0.15 -2.89 6.61 -25.61 -0.17 -3.06 16 7 C -0.11 -2.68 5.69 -25.07 -0.14 -2.83 16 8 C 0.03 0.87 2.37 -89.78 -0.21 0.66 16 9 H 0.02 0.63 7.91 -51.93 -0.41 0.22 16 10 C -0.59 -16.93 8.49 -34.44 -0.29 -17.22 16 11 H 0.05 1.41 7.77 -52.49 -0.41 1.00 16 12 C 0.02 0.53 5.36 -17.82 -0.10 0.44 16 13 N -0.91 -27.74 13.49 55.43 0.75 -27.00 16 14 Si 1.07 25.52 29.90 -169.99 -5.08 20.43 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C -0.10 -2.33 5.97 -25.07 -0.15 -2.48 16 19 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.12 7.95 -51.93 -0.41 0.70 16 26 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 27 H 0.05 1.36 6.66 -51.93 -0.35 1.01 16 28 H 0.27 8.11 5.56 -40.82 -0.23 7.88 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.61 7.97 -51.93 -0.41 1.20 16 LS Contribution 245.89 15.07 3.71 3.71 Total: -1.00 -30.37 245.89 -6.30 -36.67 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.79 Total: -3.09 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -0.53 Total: -23.28 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.75 Total: -27.00 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.35 Total: -7.44 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.37 -6.30 -36.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.028 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds