Wall clock time and date at job start Thu Apr 9 2020 13:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47099 * 2 1 4 4 C 1.42902 * 114.00057 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.01399 * 331.38826 * 4 3 2 6 6 C 1.53877 * 110.03309 * 92.83536 * 4 3 2 7 7 C 1.54269 * 106.59921 * 119.28788 * 6 4 3 8 8 C 1.54890 * 104.19827 * 23.60452 * 7 6 4 9 9 H 1.08999 * 110.91229 * 80.44460 * 8 7 6 10 10 C 1.50695 * 110.75741 * 203.74817 * 8 7 6 11 11 H 1.07995 * 120.00496 * 113.33004 * 10 8 7 12 12 C 1.37880 * 119.99572 * 293.32937 * 10 8 7 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.54271 * 110.03350 * 210.00065 * 4 3 2 19 19 H 1.09004 * 109.47050 * 60.00440 * 1 2 3 20 20 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47354 * 299.99870 * 1 2 3 22 22 H 1.09005 * 109.47112 * 240.00309 * 2 1 3 23 23 H 1.09001 * 109.47460 * 120.00205 * 2 1 3 24 24 H 1.09006 * 110.02895 * 238.56736 * 6 4 3 25 25 H 1.08994 * 110.03185 * 359.94584 * 6 4 3 26 26 H 1.09004 * 110.47743 * 264.92958 * 7 6 4 27 27 H 1.08992 * 110.48614 * 142.28747 * 7 6 4 28 28 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 29 29 H 1.08998 * 110.48854 * 98.42195 * 18 4 3 30 30 H 1.09002 * 110.59582 * 335.83552 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8739 0.5932 0.4895 6 6 3.9501 1.5732 -1.4447 7 6 4.6755 2.9309 -1.5471 8 6 5.0777 3.2578 -0.0875 9 1 5.9813 2.7186 0.1972 10 6 5.2636 4.7419 0.0956 11 1 4.5870 5.2970 0.7284 12 6 6.2977 5.3913 -0.5447 13 7 7.1215 4.7155 -1.3157 14 14 6.5288 7.2309 -0.3172 15 1 6.7543 7.5275 1.1203 16 1 5.3130 7.9441 -0.7849 17 1 7.7029 7.6837 -1.1057 18 6 3.8589 2.7530 0.7241 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8900 24 1 4.6459 0.7612 -1.6559 25 1 3.1156 1.5411 -2.1451 26 1 4.0026 3.6943 -1.9375 27 1 5.5611 2.8436 -2.1764 28 1 7.0018 3.7601 -1.4335 29 1 4.1485 2.5360 1.7523 30 1 3.0550 3.4888 0.7024 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:10 Heat of formation + Delta-G solvation = -94.025780 kcal Electronic energy + Delta-G solvation = -11419.457004 eV Core-core repulsion = 9405.849302 eV Total energy + Delta-G solvation = -2013.607703 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.00183 -37.48323 -34.46199 -31.93016 -29.97017 -28.38392 -25.75746 -23.71582 -21.46975 -21.22125 -19.01668 -17.78669 -16.63834 -16.05049 -15.88208 -15.63733 -14.41744 -14.18107 -14.06496 -13.49836 -13.38360 -12.79621 -12.57146 -12.39940 -12.14484 -12.04478 -11.91431 -11.67347 -11.53269 -11.25364 -10.55621 -10.47247 -10.40258 -8.57807 -6.29981 1.53573 1.61456 1.80858 2.58197 2.79841 3.20940 3.80382 3.83861 4.06383 4.18391 4.34873 4.44564 4.49720 4.60192 4.76247 4.80532 4.91343 4.93968 5.03612 5.07028 5.13572 5.20593 5.29787 5.44666 5.66164 6.13204 6.24745 6.40467 6.68144 7.49448 8.81167 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.083933 B = 0.008991 C = 0.008555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.521310 B = 3113.539651 C = 3272.292679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.403 6.403 4 C 0.094 3.906 5 H 0.075 0.925 6 C -0.136 4.136 7 C -0.107 4.107 8 C 0.022 3.978 9 H 0.005 0.995 10 C -0.610 4.610 11 H 0.042 0.958 12 C -0.031 4.031 13 N -0.938 5.938 14 Si 1.112 2.888 15 H -0.271 1.271 16 H -0.274 1.274 17 H -0.283 1.283 18 C -0.101 4.101 19 H 0.055 0.945 20 H 0.095 0.905 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 -8.524 1.946 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.324 6.324 4 C 0.036 3.964 5 H 0.093 0.907 6 C -0.174 4.174 7 C -0.145 4.145 8 C 0.004 3.996 9 H 0.023 0.977 10 C -0.648 4.648 11 H 0.061 0.939 12 C -0.229 4.229 13 N -0.576 5.576 14 Si 0.934 3.066 15 H -0.196 1.196 16 H -0.199 1.199 17 H -0.208 1.208 18 C -0.138 4.138 19 H 0.075 0.925 20 H 0.113 0.887 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.414 -7.110 1.512 11.119 hybrid contribution -0.571 -1.457 0.306 1.595 sum -8.985 -8.567 1.818 12.547 Atomic orbital electron populations 1.21756 0.92581 1.03461 1.02557 1.22754 0.96638 0.83193 1.00657 1.87949 1.21270 1.28041 1.95100 1.22753 0.80458 0.97953 0.95232 0.90731 1.22640 0.99938 0.97630 0.97214 1.22308 0.97750 0.95410 0.99044 1.19720 0.92643 0.95138 0.92137 0.97689 1.22337 1.15953 0.94469 1.32028 0.93920 1.27208 0.92479 1.10456 0.92755 1.70904 1.38841 1.10192 1.37630 0.82991 0.76614 0.69894 0.77062 1.19619 1.19936 1.20826 1.22321 0.97749 0.95605 0.98169 0.92547 0.88670 0.92365 0.92859 0.92586 0.90744 0.91175 0.94670 0.94367 0.92721 0.92099 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 10.28 71.98 0.74 -2.21 16 2 C 0.04 1.09 6.50 71.98 0.47 1.56 16 3 O -0.40 -14.03 9.90 -148.98 -1.47 -15.50 16 4 C 0.09 3.43 3.39 31.32 0.11 3.54 16 5 H 0.07 2.39 7.80 -2.39 -0.02 2.37 16 6 C -0.14 -5.16 6.61 31.32 0.21 -4.95 16 7 C -0.11 -5.14 5.69 31.67 0.18 -4.96 16 8 C 0.02 1.15 2.37 -10.25 -0.02 1.13 16 9 H 0.01 0.28 7.91 -2.39 -0.02 0.26 16 10 C -0.61 -35.47 8.49 25.60 0.22 -35.26 16 11 H 0.04 2.47 7.77 -2.91 -0.02 2.45 16 12 C -0.03 -1.80 5.36 84.66 0.45 -1.34 16 13 N -0.94 -57.84 13.49 21.45 0.29 -57.55 16 14 Si 1.11 51.28 29.90 68.60 2.05 53.33 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 C -0.10 -4.43 5.97 31.67 0.19 -4.24 16 19 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 24 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 25 H 0.07 2.50 7.95 -2.39 -0.02 2.48 16 26 H 0.03 1.79 8.04 -2.38 -0.02 1.77 16 27 H 0.04 1.92 6.66 -2.39 -0.02 1.91 16 28 H 0.26 16.12 5.56 -92.70 -0.52 15.61 16 29 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.05 2.47 7.97 -2.39 -0.02 2.45 16 Total: -1.00 -65.18 245.89 4.74 -60.44 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.34 Total: 6.02 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 2.54 Total: -46.74 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.29 Total: -57.55 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -1.47 Total: -15.50 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Total: -65.18 4.74 -60.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.584 kcal (2) G-P(sol) polarization free energy of solvation -65.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds