Wall clock time and date at job start Thu Apr 9 2020 13:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46960 * 111.00068 * 2 1 4 4 C 1.53052 * 109.36665 * 176.81149 * 3 2 1 5 5 N 1.46963 * 109.36150 * 58.40306 * 4 3 2 6 6 C 1.46960 * 110.87932 * 300.67951 * 5 4 3 7 7 C 1.46962 * 111.00030 * 236.20616 * 2 1 3 8 8 H 1.09000 * 109.50490 * 63.20636 * 7 2 1 9 9 C 1.53006 * 109.48632 * 303.15365 * 7 2 1 10 10 C 1.50694 * 109.47010 * 174.80575 * 9 7 2 11 11 H 1.08001 * 120.00202 * 355.36390 * 10 9 7 12 12 C 1.37876 * 119.99961 * 175.36607 * 10 9 7 13 13 N 1.31510 * 120.00090 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00024 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47343 * 270.00099 * 14 12 10 16 16 H 1.48497 * 109.47433 * 149.99984 * 14 12 10 17 17 H 1.48502 * 109.47151 * 30.00086 * 14 12 10 18 18 H 1.09007 * 109.46934 * 190.11579 * 1 2 3 19 19 H 1.09001 * 109.47251 * 310.10825 * 1 2 3 20 20 H 1.08994 * 109.47513 * 70.11022 * 1 2 3 21 21 H 1.09003 * 109.48769 * 56.84865 * 3 2 1 22 22 H 1.09000 * 109.50508 * 296.79500 * 3 2 1 23 23 H 1.08998 * 109.48986 * 298.44173 * 4 3 2 24 24 H 1.08998 * 109.50663 * 178.37866 * 4 3 2 25 25 H 1.00902 * 110.99878 * 64.54587 * 5 4 3 26 26 H 1.08997 * 109.49035 * 299.35374 * 6 5 4 27 27 H 1.09002 * 109.48246 * 179.28662 * 6 5 4 28 28 H 1.08999 * 109.47104 * 54.80007 * 9 7 2 29 29 H 1.09002 * 109.46853 * 294.80349 * 9 7 2 30 30 H 0.97001 * 120.00290 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0501 0.5659 -1.0599 6 6 3.5234 -0.8060 -1.0599 7 6 1.9956 -0.7631 -1.1402 8 1 1.6937 -0.2822 -2.0706 9 6 1.4421 -2.1890 -1.0994 10 6 1.8789 -2.9328 -2.3351 11 1 2.4263 -2.4175 -3.1104 12 6 1.5796 -4.2713 -2.4758 13 7 1.9612 -4.9207 -3.5539 14 14 0.6333 -5.1629 -1.1345 15 1 1.5883 -5.7347 -0.1514 16 1 -0.1696 -6.2564 -1.7383 17 1 -0.2710 -4.2062 -0.4473 18 1 -0.3633 -1.0118 0.1805 19 1 -0.3634 0.6621 0.7860 20 1 -0.3634 0.3496 -0.9663 21 1 1.6013 1.9129 0.8603 22 1 1.6937 1.8777 -0.9171 23 1 3.8254 0.8479 1.0105 24 1 3.9181 2.3448 0.0514 25 1 3.8464 1.0315 -1.9316 26 1 3.8253 -1.3115 -0.1426 27 1 3.9177 -1.3468 -1.9202 28 1 0.3533 -2.1551 -1.0615 29 1 1.8207 -2.7005 -0.2145 30 1 1.7509 -5.8624 -3.6528 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269322.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:12 Heat of formation + Delta-G solvation = 2.713898 kcal Electronic energy + Delta-G solvation = -11731.387440 eV Core-core repulsion = 9754.267436 eV Total energy + Delta-G solvation = -1977.120004 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.92489 -34.07458 -33.24069 -31.35381 -28.02415 -26.56614 -23.51718 -22.90514 -20.90060 -19.35809 -16.93016 -15.69713 -14.73028 -14.60602 -14.36410 -14.25461 -13.51125 -12.74462 -12.69034 -12.08632 -11.91207 -11.49867 -11.37404 -10.96654 -10.94146 -10.53896 -10.14448 -9.93986 -9.72822 -9.25337 -8.55598 -8.07142 -7.77918 -6.06264 -4.04474 3.31129 3.38393 3.42535 4.30700 4.44280 4.70806 5.27217 5.31242 5.38341 5.51325 5.62280 5.80657 5.82155 5.93239 6.00646 6.22215 6.27553 6.29471 6.55473 6.88062 7.10442 7.26506 7.36080 7.48160 7.60445 7.72464 7.84433 8.50069 8.96747 9.56073 11.06736 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053110 B = 0.012646 C = 0.011001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.083530 B = 2213.693926 C = 2544.724077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.017 3.983 4 C 0.060 3.940 5 N -0.692 5.692 6 C 0.072 3.928 7 C 0.063 3.937 8 H 0.032 0.968 9 C -0.002 4.002 10 C -0.520 4.520 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.902 5.902 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.267 1.267 18 H 0.074 0.926 19 H 0.056 0.944 20 H 0.021 0.979 21 H 0.070 0.930 22 H 0.025 0.975 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.333 0.667 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.016 0.984 29 H 0.021 0.979 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 10.268 6.826 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.266 5.266 3 C -0.113 4.113 4 C -0.070 4.070 5 N -0.319 5.319 6 C -0.057 4.057 7 C -0.046 4.046 8 H 0.050 0.950 9 C -0.040 4.040 10 C -0.558 4.558 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.540 5.540 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.192 1.192 18 H 0.093 0.907 19 H 0.074 0.926 20 H 0.040 0.960 21 H 0.089 0.911 22 H 0.043 0.957 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.000 9.690 7.492 12.249 hybrid contribution -1.869 -0.029 -0.430 1.918 sum -1.870 9.662 7.062 12.113 Atomic orbital electron populations 1.22349 0.88028 1.02506 0.99262 1.62207 1.07474 1.12098 1.44848 1.22836 0.97909 0.90581 1.00000 1.22062 0.91088 0.98007 0.95861 1.60860 1.61420 1.04186 1.05462 1.22136 0.91388 0.88411 1.03776 1.22366 0.96565 0.96404 0.89228 0.94985 1.19597 0.96014 0.90597 0.97769 1.21048 1.36593 0.94738 1.03425 0.90970 1.24979 0.95339 0.97459 0.95458 1.69906 1.46846 1.09895 1.27385 0.86774 0.80610 0.79485 0.82379 1.20161 1.21493 1.19169 0.90709 0.92551 0.96022 0.91149 0.95709 0.90399 0.91100 0.85047 0.90725 0.88902 0.96551 0.96046 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 8.99 60.06 0.54 0.98 16 2 N -0.54 -9.71 4.78 -234.72 -1.12 -10.83 16 3 C 0.02 0.25 5.60 -3.76 -0.02 0.23 16 4 C 0.06 0.85 6.72 -3.76 -0.03 0.83 16 5 N -0.69 -11.26 6.91 -113.63 -0.79 -12.04 16 6 C 0.07 1.40 5.79 -3.77 -0.02 1.38 16 7 C 0.06 1.30 1.96 -67.65 -0.13 1.17 16 8 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 9 C 0.00 -0.04 3.34 -27.88 -0.09 -0.13 16 10 C -0.52 -14.54 8.90 -34.44 -0.31 -14.85 16 11 H 0.07 2.16 7.50 -52.49 -0.39 1.77 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 14 Si 0.88 21.82 27.38 -169.99 -4.65 17.17 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.27 -6.40 6.68 56.52 0.38 -6.03 16 18 H 0.07 1.32 6.51 -51.92 -0.34 0.98 16 19 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 20 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 21 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.33 5.07 8.89 -39.29 -0.35 4.72 16 26 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.09 1.97 7.12 -51.93 -0.37 1.60 16 28 H 0.02 0.40 5.59 -51.93 -0.29 0.11 16 29 H 0.02 0.52 7.31 -51.93 -0.38 0.14 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 236.84 15.07 3.57 3.57 Total: -1.00 -29.74 236.84 -7.03 -36.76 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.65 Total: 0.68 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.16 Total: -8.50 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -1.13 Total: -49.68 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.65 Total: 17.17 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.74 -7.03 -36.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269322.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.478 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds