Wall clock time and date at job start Thu Apr 9 2020 13:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46960 * 111.00068 * 2 1 4 4 C 1.53052 * 109.36665 * 176.81149 * 3 2 1 5 5 N 1.46963 * 109.36150 * 58.40306 * 4 3 2 6 6 C 1.46960 * 110.87932 * 300.67951 * 5 4 3 7 7 C 1.46962 * 111.00030 * 236.20616 * 2 1 3 8 8 H 1.09000 * 109.50490 * 63.20636 * 7 2 1 9 9 C 1.53006 * 109.48632 * 303.15365 * 7 2 1 10 10 C 1.50694 * 109.47010 * 174.80575 * 9 7 2 11 11 H 1.08001 * 120.00202 * 355.36390 * 10 9 7 12 12 C 1.37876 * 119.99961 * 175.36607 * 10 9 7 13 13 N 1.31510 * 120.00090 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00024 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47343 * 270.00099 * 14 12 10 16 16 H 1.48497 * 109.47433 * 149.99984 * 14 12 10 17 17 H 1.48502 * 109.47151 * 30.00086 * 14 12 10 18 18 H 1.09007 * 109.46934 * 190.11579 * 1 2 3 19 19 H 1.09001 * 109.47251 * 310.10825 * 1 2 3 20 20 H 1.08994 * 109.47513 * 70.11022 * 1 2 3 21 21 H 1.09003 * 109.48769 * 56.84865 * 3 2 1 22 22 H 1.09000 * 109.50508 * 296.79500 * 3 2 1 23 23 H 1.08998 * 109.48986 * 298.44173 * 4 3 2 24 24 H 1.08998 * 109.50663 * 178.37866 * 4 3 2 25 25 H 1.00902 * 110.99878 * 64.54587 * 5 4 3 26 26 H 1.08997 * 109.49035 * 299.35374 * 6 5 4 27 27 H 1.09002 * 109.48246 * 179.28662 * 6 5 4 28 28 H 1.08999 * 109.47104 * 54.80007 * 9 7 2 29 29 H 1.09002 * 109.46853 * 294.80349 * 9 7 2 30 30 H 0.97001 * 120.00290 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0501 0.5659 -1.0599 6 6 3.5234 -0.8060 -1.0599 7 6 1.9956 -0.7631 -1.1402 8 1 1.6937 -0.2822 -2.0706 9 6 1.4421 -2.1890 -1.0994 10 6 1.8789 -2.9328 -2.3351 11 1 2.4263 -2.4175 -3.1104 12 6 1.5796 -4.2713 -2.4758 13 7 1.9612 -4.9207 -3.5539 14 14 0.6333 -5.1629 -1.1345 15 1 1.5883 -5.7347 -0.1514 16 1 -0.1696 -6.2564 -1.7383 17 1 -0.2710 -4.2062 -0.4473 18 1 -0.3633 -1.0118 0.1805 19 1 -0.3634 0.6621 0.7860 20 1 -0.3634 0.3496 -0.9663 21 1 1.6013 1.9129 0.8603 22 1 1.6937 1.8777 -0.9171 23 1 3.8254 0.8479 1.0105 24 1 3.9181 2.3448 0.0514 25 1 3.8464 1.0315 -1.9316 26 1 3.8253 -1.3115 -0.1426 27 1 3.9177 -1.3468 -1.9202 28 1 0.3533 -2.1551 -1.0615 29 1 1.8207 -2.7005 -0.2145 30 1 1.7509 -5.8624 -3.6528 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269322.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:12 Heat of formation + Delta-G solvation = -20.877444 kcal Electronic energy + Delta-G solvation = -11732.410437 eV Core-core repulsion = 9754.267436 eV Total energy + Delta-G solvation = -1978.143002 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.35208 -35.62219 -35.04968 -33.18882 -29.65087 -28.05238 -25.28425 -24.31421 -22.41988 -20.96885 -19.04292 -17.06848 -16.49363 -16.08742 -15.94860 -15.66910 -15.08168 -14.65208 -14.13190 -13.76236 -13.49331 -13.00939 -12.92670 -12.56012 -12.35421 -12.12109 -11.88488 -11.84792 -11.45266 -11.36967 -10.76934 -9.47609 -9.16758 -8.29616 -6.32934 1.35719 1.35969 1.48220 2.35226 2.94623 3.05502 3.39347 4.06345 4.11759 4.18099 4.24473 4.38478 4.57324 4.67021 4.70152 4.73484 4.89224 4.95951 5.08329 5.15229 5.27594 5.42350 5.58651 5.97227 6.06941 6.20377 6.28368 6.46830 6.73160 7.31109 8.86617 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053110 B = 0.012646 C = 0.011001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.083530 B = 2213.693926 C = 2544.724077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.017 3.983 4 C 0.060 3.940 5 N -0.691 5.691 6 C 0.083 3.917 7 C 0.073 3.927 8 H 0.015 0.985 9 C 0.005 3.995 10 C -0.523 4.523 11 H 0.036 0.964 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.947 3.053 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.252 1.252 18 H 0.059 0.941 19 H 0.089 0.911 20 H 0.017 0.983 21 H 0.099 0.901 22 H 0.027 0.973 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.340 0.660 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.017 0.983 29 H 0.019 0.981 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 11.614 8.877 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.275 5.275 3 C -0.112 4.112 4 C -0.069 4.069 5 N -0.319 5.319 6 C -0.048 4.048 7 C -0.037 4.037 8 H 0.033 0.967 9 C -0.033 4.033 10 C -0.562 4.562 11 H 0.054 0.946 12 C -0.188 4.188 13 N -0.588 5.588 14 Si 0.771 3.229 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.175 1.175 18 H 0.078 0.922 19 H 0.108 0.892 20 H 0.036 0.964 21 H 0.117 0.883 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.123 0.877 25 H 0.157 0.843 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.710 11.071 9.554 14.641 hybrid contribution -1.607 -0.356 -1.111 1.986 sum -2.318 10.715 8.443 13.837 Atomic orbital electron populations 1.22394 0.87131 1.02433 1.00265 1.62177 1.08419 1.14017 1.42881 1.22950 0.98105 0.88756 1.01386 1.22202 0.90899 0.99307 0.94530 1.60815 1.61307 1.02944 1.06795 1.21839 0.90719 0.90248 1.01955 1.22087 0.97112 0.94717 0.89793 0.96701 1.19468 0.95962 0.92463 0.95398 1.21304 1.35696 0.95097 1.04063 0.94565 1.25898 0.96510 0.98465 0.97905 1.70049 1.48656 1.10437 1.29690 0.85703 0.79469 0.78372 0.79366 1.19229 1.20965 1.17540 0.92246 0.89227 0.96428 0.88260 0.95454 0.90706 0.87713 0.84320 0.91455 0.91853 0.96454 0.96243 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 8.99 127.69 1.15 1.93 16 2 N -0.55 -18.46 4.78 -896.52 -4.29 -22.75 16 3 C 0.02 0.45 5.60 86.31 0.48 0.93 16 4 C 0.06 1.51 6.72 86.31 0.58 2.09 16 5 N -0.69 -21.47 6.91 -513.42 -3.55 -25.02 16 6 C 0.08 3.21 5.79 86.31 0.50 3.71 16 7 C 0.07 2.96 1.96 44.92 0.09 3.05 16 8 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 9 C 0.01 0.25 3.34 29.85 0.10 0.35 16 10 C -0.52 -30.08 8.90 25.60 0.23 -29.85 16 11 H 0.04 2.28 7.50 -2.91 -0.02 2.26 16 12 C 0.01 0.55 5.47 84.65 0.46 1.01 16 13 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 14 Si 0.95 44.89 27.38 68.60 1.88 46.76 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 17 H -0.25 -11.21 6.68 99.48 0.66 -10.54 16 18 H 0.06 1.98 6.51 -2.38 -0.02 1.96 16 19 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16 20 H 0.02 0.54 8.12 -2.39 -0.02 0.52 16 21 H 0.10 2.07 8.07 -2.39 -0.02 2.05 16 22 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.34 9.90 8.89 -89.69 -0.80 9.10 16 26 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.06 2.80 7.12 -2.39 -0.02 2.79 16 28 H 0.02 0.83 5.59 -2.39 -0.01 0.81 16 29 H 0.02 0.93 7.31 -2.39 -0.02 0.92 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -64.40 236.84 -1.80 -66.20 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.27 Total: 10.73 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 3.59 Total: -16.77 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -7.54 Total: -106.93 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.76 kcal Total: -64.40 -1.80 -66.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269322.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.324 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds