Wall clock time and date at job start Thu Apr 9 2020 13:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99931 * 2 1 4 4 C 1.52999 * 110.43378 * 54.75588 * 3 2 1 5 5 C 1.50706 * 109.46982 * 59.23233 * 4 3 2 6 6 H 1.08002 * 119.99646 * 355.15677 * 5 4 3 7 7 C 1.37877 * 119.99882 * 175.15525 * 5 4 3 8 8 N 1.31516 * 119.99982 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99985 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47518 * 89.99747 * 9 7 5 11 11 H 1.48496 * 109.47302 * 210.00280 * 9 7 5 12 12 H 1.48504 * 109.47267 * 329.99709 * 9 7 5 13 13 C 1.54888 * 110.48604 * 292.21343 * 3 2 1 14 14 C 1.55229 * 102.59074 * 279.18959 * 13 3 2 15 15 C 1.54275 * 104.23068 * 322.08410 * 14 13 3 16 16 C 1.53874 * 106.59515 * 23.61089 * 15 14 13 17 17 H 1.08997 * 109.47341 * 55.93569 * 1 2 3 18 18 H 1.09004 * 109.46704 * 175.93852 * 1 2 3 19 19 H 1.08999 * 109.46800 * 295.93286 * 1 2 3 20 20 H 1.08997 * 109.46971 * 179.22905 * 4 3 2 21 21 H 1.08995 * 109.47351 * 299.23400 * 4 3 2 22 22 H 0.97003 * 120.00045 * 179.97438 * 8 7 5 23 23 H 1.09002 * 110.75681 * 37.58083 * 13 3 2 24 24 H 1.09004 * 110.75410 * 160.94488 * 13 3 2 25 25 H 1.09000 * 110.46995 * 203.39736 * 14 13 3 26 26 H 1.08996 * 110.47330 * 80.77572 * 14 13 3 27 27 H 1.08997 * 110.02888 * 264.32649 * 15 14 13 28 28 H 1.09003 * 110.02848 * 142.89773 * 15 14 13 29 29 H 1.09001 * 110.02777 * 240.71111 * 16 15 14 30 30 H 1.09002 * 110.03105 * 119.28734 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4717 2.1299 1.1709 5 6 1.7950 1.4324 2.4671 6 1 2.2609 0.4582 2.4544 7 6 1.4958 2.0380 3.6691 8 7 0.9280 3.2242 3.6845 9 14 1.8972 1.1738 5.2757 10 1 3.2664 1.5491 5.7112 11 1 0.9180 1.5813 6.3151 12 1 1.8262 -0.2964 5.0782 13 6 1.7296 2.0238 -1.3432 14 6 2.8117 1.4236 -2.2805 15 6 4.0582 1.2867 -1.3818 16 6 3.5485 1.2116 0.0681 17 1 -0.3634 0.5756 -0.8513 18 1 -0.3633 -1.0251 -0.0728 19 1 -0.3633 0.4494 0.9242 20 1 1.9349 3.1166 1.1639 21 1 0.3911 2.2351 1.0746 22 1 0.7172 3.6501 4.5301 23 1 0.7285 1.7892 -1.7050 24 1 1.8617 3.1009 -1.2402 25 1 3.0132 2.0991 -3.1118 26 1 2.4979 0.4469 -2.6488 27 1 4.7050 2.1552 -1.5057 28 1 4.6021 0.3764 -1.6341 29 1 3.9481 2.0436 0.6479 30 1 3.8452 0.2649 0.5196 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:15 Heat of formation + Delta-G solvation = -85.597315 kcal Electronic energy + Delta-G solvation = -11852.464914 eV Core-core repulsion = 9839.222697 eV Total energy + Delta-G solvation = -2013.242217 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.32022 -36.31382 -35.03564 -31.49088 -29.66676 -28.06066 -26.79945 -24.27521 -21.27242 -20.43280 -18.38953 -17.27354 -16.75617 -16.15876 -15.82190 -15.25407 -15.03170 -14.32073 -13.74914 -13.29430 -13.22921 -12.80058 -12.56180 -12.37965 -12.16026 -12.03080 -11.92236 -11.72732 -11.37315 -11.21414 -10.85736 -10.55165 -10.01204 -8.18122 -6.25744 1.38120 1.38562 1.50269 2.41089 3.10565 3.17572 3.81691 3.85656 4.13485 4.48206 4.57330 4.65064 4.68368 4.76914 4.88318 4.94304 4.95659 5.07615 5.15017 5.17490 5.32110 5.38274 5.44674 5.55016 5.68495 5.80168 6.26813 6.64309 6.88773 7.41677 8.93521 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.051412 B = 0.012721 C = 0.012131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.486266 B = 2200.577993 C = 2307.558219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.114 3.886 4 C 0.011 3.989 5 C -0.513 4.513 6 H 0.053 0.947 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.268 1.268 13 C -0.150 4.150 14 C -0.109 4.109 15 C -0.118 4.118 16 C -0.101 4.101 17 H 0.047 0.953 18 H 0.096 0.904 19 H 0.023 0.977 20 H 0.001 0.999 21 H -0.006 1.006 22 H 0.262 0.738 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 -3.905 -9.303 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.075 3.925 4 C -0.026 4.026 5 C -0.551 4.551 6 H 0.072 0.928 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.193 1.193 13 C -0.188 4.188 14 C -0.146 4.146 15 C -0.155 4.155 16 C -0.138 4.138 17 H 0.065 0.935 18 H 0.114 0.886 19 H 0.041 0.959 20 H 0.020 0.980 21 H 0.012 0.988 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.727 -3.949 -9.190 10.367 hybrid contribution -0.347 0.179 1.301 1.358 sum 2.379 -3.770 -7.889 9.062 Atomic orbital electron populations 1.22689 0.81624 1.02445 0.99564 1.87763 1.19938 1.28165 1.94895 1.22434 0.93746 0.82771 0.93594 1.19539 0.94815 0.94698 0.93565 1.21395 1.38694 1.03389 0.91621 0.92849 1.25868 0.95353 0.95645 1.02834 1.70086 1.44059 1.16346 1.27076 0.85572 0.78140 0.79016 0.79114 1.19792 1.20798 1.19273 1.23133 0.99943 0.99880 0.95843 1.22311 0.94082 1.00948 0.97282 1.22149 0.97883 1.02327 0.93145 1.21990 0.92712 1.01374 0.97743 0.93499 0.88563 0.95855 0.98018 0.98820 0.92961 0.91299 0.91336 0.89843 0.91453 0.90806 0.90815 0.92213 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.25 10.22 113.37 1.16 2.41 16 2 O -0.39 -16.76 9.92 -148.98 -1.48 -18.24 16 3 C 0.11 4.86 0.47 -9.72 0.00 4.86 16 4 C 0.01 0.58 3.40 29.85 0.10 0.68 16 5 C -0.51 -29.56 8.16 25.60 0.21 -29.35 16 6 H 0.05 3.09 7.56 -2.91 -0.02 3.07 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 9 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 C -0.15 -5.23 5.91 32.00 0.19 -5.04 16 14 C -0.11 -3.04 6.82 31.79 0.22 -2.83 16 15 C -0.12 -3.45 6.80 31.32 0.21 -3.24 16 16 C -0.10 -3.95 5.51 31.32 0.17 -3.77 16 17 H 0.05 1.57 6.33 -2.39 -0.02 1.55 16 18 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 19 H 0.02 1.02 6.57 -2.39 -0.02 1.00 16 20 H 0.00 0.09 8.12 -2.39 -0.02 0.07 16 21 H -0.01 -0.37 6.72 -2.39 -0.02 -0.38 16 22 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.07 2.27 6.30 -2.39 -0.02 2.25 16 24 H 0.07 2.40 8.06 -2.38 -0.02 2.38 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 2.51 7.82 -2.39 -0.02 2.49 16 30 H 0.06 2.27 8.07 -2.39 -0.02 2.25 16 Total: -1.00 -64.56 241.38 4.64 -59.92 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.09 Total: 3.62 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 2.72 Total: -35.81 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.28 Total: -56.97 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -1.48 Total: -18.24 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -64.56 4.64 -59.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.677 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds