Wall clock time and date at job start Thu Apr 9 2020 13:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99882 * 2 1 4 4 H 1.48504 * 109.47274 * 240.00095 * 3 2 1 5 5 H 1.48497 * 109.47136 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47418 * 119.99966 * 3 2 1 7 7 C 1.37881 * 120.00662 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00666 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99150 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46549 * 179.97438 * 9 7 2 11 11 C 1.48064 * 111.16437 * 52.60397 * 10 9 7 12 12 C 1.53988 * 107.14543 * 145.63064 * 11 10 9 13 13 C 1.54593 * 105.13853 * 358.91767 * 12 11 10 14 14 H 1.09000 * 110.87780 * 96.47189 * 13 12 11 15 15 C 1.53008 * 110.72605 * 219.68418 * 13 12 11 16 16 O 1.42897 * 109.46855 * 288.50186 * 15 13 12 17 17 C 1.48537 * 110.99943 * 169.99714 * 10 9 7 18 18 H 0.96997 * 120.00422 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47486 * 60.00183 * 9 7 2 20 20 H 1.08994 * 109.47034 * 299.99334 * 9 7 2 21 21 H 1.09006 * 109.75798 * 26.31855 * 11 10 9 22 22 H 1.09000 * 109.99508 * 265.08007 * 11 10 9 23 23 H 1.09005 * 110.31083 * 240.00088 * 12 11 10 24 24 H 1.08999 * 110.39531 * 117.87480 * 12 11 10 25 25 H 1.08999 * 109.46706 * 48.49825 * 15 13 12 26 26 H 1.08993 * 109.47151 * 168.50304 * 15 13 12 27 27 H 0.96705 * 113.99691 * 179.97438 * 16 15 13 28 28 H 1.09002 * 110.66696 * 81.84409 * 17 10 9 29 29 H 1.09001 * 110.66368 * 318.88248 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 3.1906 -3.4770 1.0975 12 6 3.5246 -4.8972 1.5899 13 6 2.6525 -5.8389 0.7281 14 1 3.2198 -6.2286 -0.1170 15 6 2.0914 -6.9832 1.5748 16 8 3.1453 -7.8876 1.9115 17 6 1.5138 -4.9077 0.2414 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 2.7569 -2.8945 1.9105 22 1 4.0932 -2.9899 0.7286 23 1 3.2673 -5.0025 2.6439 24 1 4.5816 -5.1140 1.4357 25 1 1.6540 -6.5790 2.4877 26 1 1.3254 -7.5126 1.0083 27 1 2.8615 -8.6394 2.4494 28 1 1.0747 -5.2868 -0.6814 29 1 0.7509 -4.7976 1.0121 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051887458.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:15 Heat of formation + Delta-G solvation = -55.122796 kcal Electronic energy + Delta-G solvation = -11428.819007 eV Core-core repulsion = 9351.472353 eV Total energy + Delta-G solvation = -2077.346654 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.52354 -36.36925 -33.15133 -31.24544 -28.80878 -26.82648 -24.16687 -22.46903 -20.11874 -19.57784 -17.24582 -16.07954 -15.76818 -15.05330 -14.17341 -14.12386 -13.21353 -13.09399 -12.62231 -12.13632 -11.63252 -11.32640 -11.00107 -10.74098 -10.71870 -10.59151 -10.32230 -10.05156 -9.87823 -9.77949 -9.10757 -8.45853 -7.28822 -6.03363 -4.04856 3.33839 3.37512 3.40830 4.23965 4.44645 4.88679 5.12614 5.30997 5.31693 5.44521 5.62607 5.71971 5.82132 5.95607 6.16848 6.31315 6.38635 6.58336 6.77382 6.80567 7.22389 7.39433 7.63276 7.76520 8.00600 8.21853 8.51862 9.02636 9.59562 11.08022 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.090990 B = 0.008596 C = 0.008113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.652017 B = 3256.517976 C = 3450.437521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.184 3.816 10 N -0.517 5.517 11 C 0.050 3.950 12 C -0.122 4.122 13 C -0.092 4.092 14 H 0.084 0.916 15 C 0.084 3.916 16 O -0.573 6.573 17 C 0.041 3.959 18 H 0.262 0.738 19 H 0.033 0.967 20 H -0.008 1.008 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.374 0.626 28 H 0.072 0.928 29 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -11.080 3.886 12.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.058 3.942 10 N -0.242 5.242 11 C -0.078 4.078 12 C -0.160 4.160 13 C -0.111 4.111 14 H 0.103 0.897 15 C 0.007 3.993 16 O -0.378 6.378 17 C -0.087 4.087 18 H 0.072 0.928 19 H 0.051 0.949 20 H 0.010 0.990 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.220 0.780 28 H 0.091 0.909 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.606 -10.481 3.018 11.487 hybrid contribution -0.482 0.619 1.110 1.359 sum 3.123 -9.862 4.128 11.138 Atomic orbital electron populations 1.69947 1.06083 1.26915 1.50820 1.24992 0.94869 0.99347 0.95302 0.86552 0.79452 0.82681 0.78689 1.20112 1.21318 1.20250 1.21175 0.93472 0.90113 1.50465 0.91904 1.19898 0.90519 0.87547 0.96196 1.64855 1.15358 1.01993 1.41988 1.22665 0.97208 0.94416 0.93513 1.22466 0.99727 0.95287 0.98503 1.22070 0.97529 0.93489 0.98045 0.89733 1.22249 0.88931 0.90506 0.97663 1.86508 1.37156 1.39245 1.74905 1.23120 0.94726 0.91593 0.99286 0.92842 0.94942 0.98990 0.93540 0.91280 0.92345 0.91745 0.93729 0.93743 0.78043 0.90916 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.51 -14.74 8.43 -34.44 -0.29 -15.03 15 8 H 0.06 1.77 6.86 -52.49 -0.36 1.41 15 9 C 0.18 4.95 4.76 -4.97 -0.02 4.93 15 10 N -0.52 -11.76 5.39 -231.75 -1.25 -13.01 15 11 C 0.05 1.04 5.49 -2.67 -0.01 1.02 15 12 C -0.12 -2.05 6.45 -25.38 -0.16 -2.21 15 13 C -0.09 -1.48 3.32 -88.76 -0.30 -1.77 15 14 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 15 C 0.08 1.10 6.39 37.16 0.24 1.33 15 16 O -0.57 -7.15 13.60 -35.23 -0.48 -7.63 15 17 C 0.04 0.77 6.00 -1.90 -0.01 0.76 15 18 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 19 H 0.03 0.93 8.14 -51.93 -0.42 0.51 15 20 H -0.01 -0.22 7.89 -51.93 -0.41 -0.63 15 21 H 0.05 1.03 7.59 -51.93 -0.39 0.63 15 22 H 0.07 1.44 7.74 -51.93 -0.40 1.04 15 23 H 0.06 0.92 7.72 -51.93 -0.40 0.52 15 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.04 0.56 7.95 -51.93 -0.41 0.14 15 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 15 27 H 0.37 2.74 9.12 45.56 0.42 3.15 15 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 29 H 0.04 0.68 7.75 -51.93 -0.40 0.28 15 LS Contribution 241.07 15.07 3.63 3.63 Total: -1.00 -31.50 241.07 -6.65 -38.15 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.61 Total: -2.27 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.66 Total: -9.45 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.51 Total: -39.30 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.48 Total: -7.63 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.50 -6.65 -38.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051887458.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.974 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds