Wall clock time and date at job start Thu Apr 9 2020 13:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99882 * 2 1 4 4 H 1.48504 * 109.47274 * 240.00095 * 3 2 1 5 5 H 1.48497 * 109.47136 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47418 * 119.99966 * 3 2 1 7 7 C 1.37881 * 120.00662 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00666 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99150 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46549 * 179.97438 * 9 7 2 11 11 C 1.48064 * 111.16437 * 52.60397 * 10 9 7 12 12 C 1.53988 * 107.14543 * 145.63064 * 11 10 9 13 13 C 1.54593 * 105.13853 * 358.91767 * 12 11 10 14 14 H 1.09000 * 110.87780 * 96.47189 * 13 12 11 15 15 C 1.53008 * 110.72605 * 219.68418 * 13 12 11 16 16 O 1.42897 * 109.46855 * 288.50186 * 15 13 12 17 17 C 1.48537 * 110.99943 * 169.99714 * 10 9 7 18 18 H 0.96997 * 120.00422 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47486 * 60.00183 * 9 7 2 20 20 H 1.08994 * 109.47034 * 299.99334 * 9 7 2 21 21 H 1.09006 * 109.75798 * 26.31855 * 11 10 9 22 22 H 1.09000 * 109.99508 * 265.08007 * 11 10 9 23 23 H 1.09005 * 110.31083 * 240.00088 * 12 11 10 24 24 H 1.08999 * 110.39531 * 117.87480 * 12 11 10 25 25 H 1.08999 * 109.46706 * 48.49825 * 15 13 12 26 26 H 1.08993 * 109.47151 * 168.50304 * 15 13 12 27 27 H 0.96705 * 113.99691 * 179.97438 * 16 15 13 28 28 H 1.09002 * 110.66696 * 81.84409 * 17 10 9 29 29 H 1.09001 * 110.66368 * 318.88248 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 3.1906 -3.4770 1.0975 12 6 3.5246 -4.8972 1.5899 13 6 2.6525 -5.8389 0.7281 14 1 3.2198 -6.2286 -0.1170 15 6 2.0914 -6.9832 1.5748 16 8 3.1453 -7.8876 1.9115 17 6 1.5138 -4.9077 0.2414 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 2.7569 -2.8945 1.9105 22 1 4.0932 -2.9899 0.7286 23 1 3.2673 -5.0025 2.6439 24 1 4.5816 -5.1140 1.4357 25 1 1.6540 -6.5790 2.4877 26 1 1.3254 -7.5126 1.0083 27 1 2.8615 -8.6394 2.4494 28 1 1.0747 -5.2868 -0.6814 29 1 0.7509 -4.7976 1.0121 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051887458.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:15 Heat of formation + Delta-G solvation = -80.247687 kcal Electronic energy + Delta-G solvation = -11429.908504 eV Core-core repulsion = 9351.472353 eV Total energy + Delta-G solvation = -2078.436151 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.01718 -37.49936 -35.16725 -32.98731 -30.30069 -28.75816 -25.65424 -24.33146 -21.75735 -21.05815 -18.33860 -18.15630 -17.12257 -16.89473 -15.94319 -15.37087 -14.81569 -14.61830 -14.34431 -13.85161 -13.41842 -12.96637 -12.80116 -12.51420 -12.38678 -12.05948 -11.91891 -11.78840 -11.44253 -11.21118 -10.81557 -10.65742 -9.14251 -8.24619 -6.35125 1.39266 1.42871 1.50853 2.38287 3.08444 3.17237 3.43571 3.82289 3.94371 4.13234 4.38682 4.52342 4.56290 4.61436 4.74345 4.87086 4.94759 5.01757 5.11461 5.21475 5.27930 5.42474 5.60841 5.93364 6.23414 6.51341 6.80652 6.95853 7.34993 8.87336 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.090990 B = 0.008596 C = 0.008113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.652017 B = 3256.517976 C = 3450.437521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.199 3.801 10 N -0.532 5.532 11 C 0.050 3.950 12 C -0.112 4.112 13 C -0.085 4.085 14 H 0.083 0.917 15 C 0.092 3.908 16 O -0.588 6.588 17 C 0.039 3.961 18 H 0.266 0.734 19 H 0.005 0.995 20 H -0.034 1.034 21 H 0.024 0.976 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.397 0.603 28 H 0.081 0.919 29 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -11.763 4.380 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.072 3.928 10 N -0.256 5.256 11 C -0.079 4.079 12 C -0.150 4.150 13 C -0.104 4.104 14 H 0.102 0.898 15 C 0.014 3.986 16 O -0.396 6.396 17 C -0.089 4.089 18 H 0.075 0.925 19 H 0.023 0.977 20 H -0.016 1.016 21 H 0.043 0.957 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.247 0.753 28 H 0.099 0.901 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.643 -11.205 3.526 12.630 hybrid contribution -0.815 0.762 0.953 1.467 sum 3.828 -10.443 4.478 11.990 Atomic orbital electron populations 1.70074 1.07758 1.28123 1.51362 1.25940 0.95789 1.03302 0.94500 0.85411 0.78186 0.77721 0.79168 1.19303 1.20567 1.19150 1.21485 0.93642 0.91266 1.50818 0.91916 1.19546 0.90561 0.89079 0.93568 1.64732 1.15165 1.02351 1.43359 1.22660 0.96082 0.96927 0.92183 1.22402 1.00749 0.92592 0.99245 1.21991 0.96027 0.93956 0.98417 0.89820 1.22063 0.89039 0.89874 0.97609 1.86433 1.37295 1.40222 1.75653 1.23198 0.95616 0.90223 0.99911 0.92529 0.97720 1.01603 0.95743 0.91934 0.91017 0.90385 0.93105 0.91895 0.75263 0.90077 0.94700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.76 15 2 C 0.00 0.18 5.46 84.66 0.46 0.64 15 3 Si 0.97 44.90 29.54 68.60 2.03 46.92 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 7 C -0.53 -31.23 8.43 25.60 0.22 -31.01 15 8 H 0.06 3.58 6.86 -2.91 -0.02 3.56 15 9 C 0.20 11.09 4.76 85.56 0.41 11.50 15 10 N -0.53 -24.47 5.39 -887.12 -4.78 -29.25 15 11 C 0.05 2.05 5.49 86.41 0.47 2.53 15 12 C -0.11 -3.56 6.45 31.47 0.20 -3.36 15 13 C -0.08 -2.54 3.32 -9.59 -0.03 -2.57 15 14 H 0.08 2.55 8.14 -2.39 -0.02 2.53 15 15 C 0.09 2.10 6.39 71.98 0.46 2.56 15 16 O -0.59 -12.60 13.60 -148.98 -2.03 -14.62 15 17 C 0.04 1.42 6.00 86.65 0.52 1.94 15 18 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 19 H 0.00 0.28 8.14 -2.39 -0.02 0.26 15 20 H -0.03 -2.00 7.89 -2.39 -0.02 -2.02 15 21 H 0.02 1.10 7.59 -2.38 -0.02 1.08 15 22 H 0.06 2.61 7.74 -2.39 -0.02 2.60 15 23 H 0.07 2.10 7.72 -2.38 -0.02 2.09 15 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.05 1.11 7.95 -2.39 -0.02 1.09 15 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 15 27 H 0.40 4.36 9.12 -74.05 -0.68 3.68 15 28 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 29 H 0.03 1.29 7.75 -2.39 -0.02 1.27 15 Total: -1.00 -67.57 241.07 -1.34 -68.91 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.45 Total: 2.59 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 2.71 Total: -17.78 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -4.50 Total: -86.02 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -2.03 Total: -14.62 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.57 -1.34 -68.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051887458.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.339 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds