Wall clock time and date at job start Thu Apr 9 2020 13:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99995 * 2 1 4 4 H 1.48502 * 109.46786 * 270.00431 * 3 2 1 5 5 H 1.48501 * 109.46829 * 30.00006 * 3 2 1 6 6 H 1.48497 * 109.47425 * 150.00063 * 3 2 1 7 7 C 1.37878 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99791 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99984 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.47440 * 110.99676 * 290.12778 * 10 9 7 12 12 C 1.54317 * 107.23368 * 236.73977 * 11 10 9 13 13 C 1.55144 * 103.01861 * 337.71644 * 12 11 10 14 14 H 1.09000 * 110.99290 * 277.56635 * 13 12 11 15 15 C 1.52996 * 110.99254 * 153.74565 * 13 12 11 16 16 O 1.42894 * 109.47270 * 66.45402 * 15 13 12 17 17 C 1.47842 * 111.00238 * 169.28167 * 10 9 7 18 18 H 0.96999 * 120.00010 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47267 * 60.00153 * 9 7 2 20 20 H 1.09006 * 109.47446 * 300.00077 * 9 7 2 21 21 H 1.09000 * 109.89463 * 117.33566 * 11 10 9 22 22 H 1.09000 * 109.88994 * 356.14383 * 11 10 9 23 23 H 1.08999 * 110.70846 * 96.09223 * 12 11 10 24 24 H 1.09000 * 110.71111 * 219.33808 * 12 11 10 25 25 H 1.09009 * 109.47248 * 186.45620 * 15 13 12 26 26 H 1.09001 * 109.47091 * 306.44802 * 15 13 12 27 27 H 0.96708 * 113.99740 * 179.97438 * 16 15 13 28 28 H 1.09004 * 110.37187 * 265.19138 * 17 10 9 29 29 H 1.09002 * 110.37256 * 27.42242 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 7 4.0013 -2.5789 0.0001 11 6 3.7314 -3.2346 1.2928 12 6 5.0843 -3.7304 1.8453 13 6 5.9657 -3.8314 0.5725 14 1 5.7876 -4.7699 0.0476 15 6 7.4476 -3.6718 0.9180 16 8 7.8752 -4.7839 1.7068 17 6 5.4564 -2.6264 -0.2572 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6795 0.8894 20 1 3.8746 -0.6807 -0.8905 21 1 3.0585 -4.0797 1.1467 22 1 3.2875 -2.5198 1.9856 23 1 5.5020 -3.0083 2.5469 24 1 4.9738 -4.7073 2.3159 25 1 8.0327 -3.6318 -0.0009 26 1 7.5921 -2.7498 1.4811 27 1 8.8072 -4.7493 1.9628 28 1 5.6492 -2.7874 -1.3179 29 1 5.9314 -1.7045 0.0785 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051887459.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:16 Heat of formation + Delta-G solvation = -50.367740 kcal Electronic energy + Delta-G solvation = -11463.338429 eV Core-core repulsion = 9386.197970 eV Total energy + Delta-G solvation = -2077.140459 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.68394 -36.46928 -33.07516 -31.41989 -28.97890 -27.33042 -24.37081 -22.12386 -20.12377 -19.67608 -17.32742 -16.64568 -15.84138 -15.02208 -14.34671 -14.13652 -13.29728 -12.84687 -12.66796 -12.35211 -12.26871 -11.72947 -11.14799 -10.77011 -10.65147 -10.46430 -10.38641 -10.08598 -9.91397 -9.81225 -9.26691 -8.55822 -7.34871 -6.03466 -4.00591 3.28685 3.35900 3.37525 4.15216 4.42848 4.74970 4.98417 5.17350 5.26373 5.36336 5.50657 5.55391 5.73387 5.81744 6.05340 6.21208 6.26144 6.44971 6.62475 6.73549 6.79157 6.98045 7.55791 7.61230 7.94128 8.01228 8.68254 9.06826 9.58348 11.09930 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.073745 B = 0.009418 C = 0.008854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.596896 B = 2972.321322 C = 3161.751000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.157 3.843 10 N -0.519 5.519 11 C 0.052 3.948 12 C -0.130 4.130 13 C -0.099 4.099 14 H 0.087 0.913 15 C 0.086 3.914 16 O -0.572 6.572 17 C 0.048 3.952 18 H 0.263 0.737 19 H -0.010 1.010 20 H 0.022 0.978 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.374 0.626 28 H 0.073 0.927 29 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.445 -4.698 2.579 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.031 3.969 10 N -0.243 5.243 11 C -0.076 4.076 12 C -0.169 4.169 13 C -0.118 4.118 14 H 0.105 0.895 15 C 0.008 3.992 16 O -0.377 6.377 17 C -0.081 4.081 18 H 0.073 0.927 19 H 0.007 0.993 20 H 0.040 0.960 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.220 0.780 28 H 0.091 0.909 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.366 -4.989 2.095 14.420 hybrid contribution 1.368 1.662 0.639 2.246 sum 14.734 -3.327 2.735 15.351 Atomic orbital electron populations 1.69897 1.06110 1.26783 1.51205 1.24909 0.94740 0.98812 0.94921 0.86864 0.80247 0.84074 0.78584 1.20124 1.21176 1.19380 1.21042 0.88730 0.94783 1.50059 0.90165 1.20370 0.97225 0.84398 0.94953 1.63516 1.10425 1.19654 1.30683 1.22700 0.95397 0.99056 0.90464 1.22805 0.96197 1.01232 0.96660 1.22303 0.92214 1.00077 0.97224 0.89481 1.22158 0.95261 0.88172 0.93571 1.86507 1.31092 1.46527 1.73572 1.22982 0.90199 0.95452 0.99438 0.92684 0.99273 0.95964 0.91383 0.91974 0.92215 0.91185 0.93694 0.93787 0.77955 0.90867 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 3 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 15 7 C -0.51 -14.81 9.22 -34.44 -0.32 -15.13 15 8 H 0.08 2.56 8.03 -52.49 -0.42 2.14 15 9 C 0.16 3.93 3.37 -4.98 -0.02 3.91 15 10 N -0.52 -11.35 5.15 -232.69 -1.20 -12.55 15 11 C 0.05 1.04 6.39 -2.84 -0.02 1.02 15 12 C -0.13 -2.12 6.27 -24.91 -0.16 -2.28 15 13 C -0.10 -1.50 3.32 -88.48 -0.29 -1.80 15 14 H 0.09 1.35 8.14 -51.93 -0.42 0.92 15 15 C 0.09 1.05 6.49 37.16 0.24 1.29 15 16 O -0.57 -6.80 13.51 -35.23 -0.48 -7.27 15 17 C 0.05 0.83 6.15 -2.30 -0.01 0.82 15 18 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 19 H -0.01 -0.26 7.02 -51.93 -0.36 -0.62 15 20 H 0.02 0.55 7.50 -51.93 -0.39 0.16 15 21 H 0.07 1.36 8.14 -51.93 -0.42 0.93 15 22 H 0.06 1.34 7.31 -51.93 -0.38 0.96 15 23 H 0.06 0.94 8.01 -51.93 -0.42 0.53 15 24 H 0.07 1.07 8.14 -51.93 -0.42 0.64 15 25 H 0.04 0.47 8.14 -51.92 -0.42 0.05 15 26 H 0.04 0.52 8.11 -51.93 -0.42 0.09 15 27 H 0.37 2.54 9.12 45.56 0.42 2.96 15 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 15 29 H 0.04 0.64 7.71 -51.93 -0.40 0.24 15 LS Contribution 239.34 15.07 3.61 3.61 Total: -1.00 -32.26 239.34 -6.29 -38.55 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -3.66 Total: -1.91 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.67 Total: -10.27 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.42 Total: -39.76 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.48 Total: -7.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.26 -6.29 -38.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051887459.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.818 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds