Wall clock time and date at job start Thu Apr 9 2020 13:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99995 * 2 1 4 4 H 1.48502 * 109.46786 * 270.00431 * 3 2 1 5 5 H 1.48501 * 109.46829 * 30.00006 * 3 2 1 6 6 H 1.48497 * 109.47425 * 150.00063 * 3 2 1 7 7 C 1.37878 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99791 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99984 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.47440 * 110.99676 * 290.12778 * 10 9 7 12 12 C 1.54317 * 107.23368 * 236.73977 * 11 10 9 13 13 C 1.55144 * 103.01861 * 337.71644 * 12 11 10 14 14 H 1.09000 * 110.99290 * 277.56635 * 13 12 11 15 15 C 1.52996 * 110.99254 * 153.74565 * 13 12 11 16 16 O 1.42894 * 109.47270 * 66.45402 * 15 13 12 17 17 C 1.47842 * 111.00238 * 169.28167 * 10 9 7 18 18 H 0.96999 * 120.00010 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47267 * 60.00153 * 9 7 2 20 20 H 1.09006 * 109.47446 * 300.00077 * 9 7 2 21 21 H 1.09000 * 109.89463 * 117.33566 * 11 10 9 22 22 H 1.09000 * 109.88994 * 356.14383 * 11 10 9 23 23 H 1.08999 * 110.70846 * 96.09223 * 12 11 10 24 24 H 1.09000 * 110.71111 * 219.33808 * 12 11 10 25 25 H 1.09009 * 109.47248 * 186.45620 * 15 13 12 26 26 H 1.09001 * 109.47091 * 306.44802 * 15 13 12 27 27 H 0.96708 * 113.99740 * 179.97438 * 16 15 13 28 28 H 1.09004 * 110.37187 * 265.19138 * 17 10 9 29 29 H 1.09002 * 110.37256 * 27.42242 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 7 4.0013 -2.5789 0.0001 11 6 3.7314 -3.2346 1.2928 12 6 5.0843 -3.7304 1.8453 13 6 5.9657 -3.8314 0.5725 14 1 5.7876 -4.7699 0.0476 15 6 7.4476 -3.6718 0.9180 16 8 7.8752 -4.7839 1.7068 17 6 5.4564 -2.6264 -0.2572 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6795 0.8894 20 1 3.8746 -0.6807 -0.8905 21 1 3.0585 -4.0797 1.1467 22 1 3.2875 -2.5198 1.9856 23 1 5.5020 -3.0083 2.5469 24 1 4.9738 -4.7073 2.3159 25 1 8.0327 -3.6318 -0.0009 26 1 7.5921 -2.7498 1.4811 27 1 8.8072 -4.7493 1.9628 28 1 5.6492 -2.7874 -1.3179 29 1 5.9314 -1.7045 0.0785 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051887459.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:16 Heat of formation + Delta-G solvation = -76.803601 kcal Electronic energy + Delta-G solvation = -11464.484774 eV Core-core repulsion = 9386.197970 eV Total energy + Delta-G solvation = -2078.286804 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.09373 -37.50616 -35.08110 -33.15436 -30.39604 -29.19363 -25.67719 -23.98079 -21.56976 -21.17047 -18.86458 -18.22020 -17.11342 -16.73007 -16.05582 -15.48215 -14.72574 -14.46251 -14.27661 -14.03401 -13.96581 -13.16925 -12.88057 -12.38926 -12.12893 -12.01717 -11.80970 -11.71526 -11.62281 -11.40081 -10.82451 -10.79513 -9.04519 -8.29941 -6.34240 1.33764 1.35866 1.46516 2.33424 3.02840 3.13847 3.35170 3.76661 3.95176 4.10393 4.36770 4.47089 4.54044 4.57813 4.73088 4.76612 4.86100 4.90253 5.02139 5.11846 5.18545 5.38114 5.52727 5.98743 6.28075 6.62390 6.72121 6.96257 7.29729 8.87197 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.073745 B = 0.009418 C = 0.008854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.596896 B = 2972.321322 C = 3161.751000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.521 4.521 8 H 0.032 0.968 9 C 0.169 3.831 10 N -0.543 5.543 11 C 0.050 3.950 12 C -0.119 4.119 13 C -0.093 4.093 14 H 0.083 0.917 15 C 0.094 3.906 16 O -0.589 6.589 17 C 0.046 3.954 18 H 0.268 0.732 19 H -0.009 1.009 20 H 0.029 0.971 21 H 0.056 0.944 22 H 0.036 0.964 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.398 0.602 28 H 0.085 0.915 29 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.314 -3.966 2.669 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.559 4.559 8 H 0.050 0.950 9 C 0.042 3.958 10 N -0.268 5.268 11 C -0.078 4.078 12 C -0.158 4.158 13 C -0.112 4.112 14 H 0.101 0.899 15 C 0.016 3.984 16 O -0.398 6.398 17 C -0.082 4.082 18 H 0.077 0.923 19 H 0.008 0.992 20 H 0.047 0.953 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.248 0.752 28 H 0.103 0.897 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.273 -4.284 2.189 16.969 hybrid contribution 0.415 1.307 0.613 1.502 sum 16.688 -2.976 2.802 17.182 Atomic orbital electron populations 1.70059 1.08231 1.28225 1.52445 1.25912 0.95668 1.03339 0.94172 0.85646 0.79241 0.78211 0.79416 1.18726 1.20564 1.17455 1.21270 0.91243 0.93211 1.50196 0.94981 1.20106 0.94244 0.86473 0.95006 1.63379 1.13871 1.17780 1.31745 1.22654 0.97575 0.97944 0.89637 1.22713 0.93941 1.01732 0.97382 1.22240 0.94376 0.98765 0.95789 0.89876 1.22012 0.93020 0.88548 0.94858 1.86437 1.33378 1.46380 1.73595 1.23067 0.87352 0.97061 1.00706 0.92341 0.99153 0.95271 0.92559 0.94497 0.91371 0.90119 0.91534 0.92953 0.75249 0.89700 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.51 13.96 21.45 0.30 -60.21 15 2 C 0.01 0.37 5.47 84.66 0.46 0.83 15 3 Si 0.95 44.44 27.47 68.60 1.88 46.32 15 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 15 7 C -0.52 -31.27 9.22 25.60 0.24 -31.03 15 8 H 0.03 2.16 8.03 -2.91 -0.02 2.14 15 9 C 0.17 8.37 3.37 85.55 0.29 8.66 15 10 N -0.54 -23.64 5.15 -890.09 -4.58 -28.22 15 11 C 0.05 2.02 6.39 86.65 0.55 2.57 15 12 C -0.12 -3.68 6.27 31.78 0.20 -3.48 15 13 C -0.09 -2.57 3.32 -9.41 -0.03 -2.60 15 14 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 15 C 0.09 1.91 6.49 71.98 0.47 2.38 15 16 O -0.59 -11.82 13.51 -148.98 -2.01 -13.83 15 17 C 0.05 1.49 6.15 86.77 0.53 2.03 15 18 H 0.27 15.81 8.31 -92.71 -0.77 15.04 15 19 H -0.01 -0.45 7.02 -2.39 -0.02 -0.46 15 20 H 0.03 1.40 7.50 -2.38 -0.02 1.38 15 21 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 22 H 0.04 1.64 7.31 -2.39 -0.02 1.63 15 23 H 0.07 1.99 8.01 -2.39 -0.02 1.97 15 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.07 1.10 8.14 -2.38 -0.02 1.08 15 26 H 0.05 1.00 8.11 -2.39 -0.02 0.98 15 27 H 0.40 3.85 9.12 -74.05 -0.68 3.17 15 28 H 0.08 2.56 8.14 -2.38 -0.02 2.54 15 29 H 0.05 1.48 7.71 -2.39 -0.02 1.46 15 Total: -1.00 -70.59 239.34 -1.31 -71.91 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.39 Total: 4.67 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 2.71 Total: -20.63 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -4.28 Total: -88.43 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -2.01 Total: -13.83 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -70.59 -1.31 -71.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051887459.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.897 kcal (2) G-P(sol) polarization free energy of solvation -70.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds