Wall clock time and date at job start Thu Apr 9 2020 13:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.46974 * 2 1 4 4 C 1.48186 * 111.07554 * 269.29036 * 3 2 1 5 5 C 1.53935 * 86.22269 * 222.53731 * 4 3 2 6 6 C 1.47956 * 111.00124 * 169.99985 * 3 2 1 7 7 H 1.09002 * 113.76161 * 23.15225 * 6 3 2 8 8 C 1.53005 * 113.76341 * 251.90233 * 6 3 2 9 9 N 1.46505 * 109.46904 * 56.97703 * 8 6 3 10 10 C 1.36931 * 119.99788 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99680 * 179.72358 * 10 9 8 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00121 * 14 12 10 16 16 H 1.48501 * 109.47062 * 210.00072 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99871 * 14 12 10 18 18 H 1.08991 * 109.47386 * 299.99673 * 1 2 3 19 19 H 1.08999 * 109.46948 * 60.00555 * 1 2 3 20 20 H 1.09001 * 109.46745 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.47278 * 240.00093 * 2 1 3 22 22 H 1.08997 * 109.47529 * 119.99914 * 2 1 3 23 23 H 1.09000 * 113.82151 * 108.19211 * 4 3 2 24 24 H 1.09003 * 113.75957 * 336.87385 * 4 3 2 25 25 H 1.09006 * 113.73467 * 269.26898 * 5 4 3 26 26 H 1.08999 * 113.82695 * 138.00382 * 5 4 3 27 27 H 1.09003 * 109.46946 * 296.98462 * 8 6 3 28 28 H 1.08993 * 109.47679 * 176.98005 * 8 6 3 29 29 H 0.97000 * 119.99792 * 0.02562 * 9 8 6 30 30 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.2134 1.8817 -1.3826 5 6 3.5264 2.4990 -0.8682 6 6 3.4789 1.4315 0.2399 7 1 3.9961 0.5074 -0.0181 8 6 3.8596 1.9620 1.6236 9 7 3.2173 1.1427 2.6544 10 6 3.4135 1.4307 3.9786 11 1 4.0415 2.2621 4.2632 12 6 2.8003 0.6579 4.9552 13 7 2.0346 -0.3548 4.6084 14 14 3.0618 1.0555 6.7616 15 1 2.0187 2.0107 7.2142 16 1 2.9708 -0.1924 7.5613 17 1 4.4038 1.6644 6.9452 18 1 -0.3634 0.5137 0.8899 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.4734 2.6193 -1.6932 24 1 2.3587 1.0898 -2.1174 25 1 3.4168 3.5190 -0.4997 26 1 4.3658 2.3828 -1.5537 27 1 3.5264 2.9953 1.7209 28 1 4.9418 1.9163 1.7452 29 1 2.6530 0.3963 2.3988 30 1 1.6064 -0.8951 5.2908 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712545913.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:43 Heat of formation + Delta-G solvation = 41.574826 kcal Electronic energy + Delta-G solvation = -11487.954560 eV Core-core repulsion = 9512.519692 eV Total energy + Delta-G solvation = -1975.434868 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.59170 -34.23935 -32.38683 -30.91144 -27.19406 -26.77068 -23.62319 -21.88752 -21.27270 -19.20280 -17.06142 -15.77516 -14.98456 -14.78106 -14.04425 -13.38402 -13.15541 -12.82495 -12.52804 -11.98266 -11.75155 -11.44258 -11.00984 -10.89535 -10.72352 -10.48855 -10.23412 -10.16536 -9.79755 -9.56403 -8.77787 -8.30785 -6.78519 -5.66712 -2.93274 3.49569 3.54126 3.55886 4.23913 4.67144 4.84304 5.08286 5.38597 5.52559 5.57906 5.65916 5.77615 5.81008 5.95388 5.97981 5.99783 6.18938 6.29409 6.42788 6.48276 6.67389 6.73457 6.87725 7.01826 7.57107 7.78543 8.53198 9.64096 10.25030 10.60466 11.56669 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052200 B = 0.010975 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.268126 B = 2550.706528 C = 2970.615790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.017 3.983 3 N -0.460 5.460 4 C -0.004 4.004 5 C -0.139 4.139 6 C 0.027 3.973 7 H 0.072 0.928 8 C 0.171 3.829 9 N -0.727 5.727 10 C -0.234 4.234 11 H 0.069 0.931 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.906 3.094 15 H -0.291 1.291 16 H -0.292 1.292 17 H -0.283 1.283 18 H 0.066 0.934 19 H 0.044 0.956 20 H 0.051 0.949 21 H 0.031 0.969 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.020 0.980 29 H 0.385 0.615 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 2.373 -11.499 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 N -0.183 5.183 4 C -0.133 4.133 5 C -0.178 4.178 6 C -0.083 4.083 7 H 0.090 0.910 8 C 0.043 3.957 9 N -0.371 5.371 10 C -0.365 4.365 11 H 0.087 0.913 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.737 3.263 15 H -0.218 1.218 16 H -0.219 1.219 17 H -0.209 1.209 18 H 0.085 0.915 19 H 0.063 0.937 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.219 0.781 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.324 2.757 -10.890 11.238 hybrid contribution 0.344 -0.676 0.419 0.866 sum 0.668 2.081 -10.470 10.696 Atomic orbital electron populations 1.21603 0.95009 1.00843 1.02030 1.22638 0.96868 0.90665 1.00952 1.68584 1.14509 1.19337 1.15919 1.23954 0.97629 0.99528 0.92201 1.23367 0.96981 0.99937 0.97495 1.23674 0.89745 0.97780 0.97096 0.91008 1.20560 0.94949 0.94553 0.85632 1.42270 1.58017 1.35546 1.01304 1.19267 1.23642 1.10674 0.82951 0.91298 1.24712 1.00333 0.98359 0.97815 1.69663 1.36094 1.20613 1.32022 0.86195 0.77585 0.76970 0.85502 1.21827 1.21892 1.20851 0.91474 0.93717 0.92948 0.95029 0.89821 0.89988 0.92036 0.89148 0.91578 0.95791 0.96244 0.78091 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.22 37.16 0.38 -1.82 16 2 C 0.02 0.30 5.32 -3.82 -0.02 0.28 16 3 N -0.46 -8.23 5.80 -229.71 -1.33 -9.56 16 4 C 0.00 -0.06 7.97 -2.64 -0.02 -0.08 16 5 C -0.14 -1.94 7.84 -25.79 -0.20 -2.14 16 6 C 0.03 0.47 3.41 -66.66 -0.23 0.24 16 7 H 0.07 1.24 7.92 -51.93 -0.41 0.83 16 8 C 0.17 3.71 6.41 -4.04 -0.03 3.68 16 9 N -0.73 -19.51 5.53 -59.90 -0.33 -19.84 16 10 C -0.23 -6.85 9.99 -15.06 -0.15 -7.00 16 11 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 12 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 13 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 14 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.03 0.48 7.38 -51.92 -0.38 0.10 16 22 H 0.08 1.71 6.42 -51.93 -0.33 1.37 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 25 H 0.09 1.26 7.92 -51.93 -0.41 0.85 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.02 0.54 7.87 -51.93 -0.41 0.13 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.38 10.71 5.67 -40.82 -0.23 10.48 16 30 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 247.58 15.07 3.73 3.73 Total: -1.00 -31.54 247.58 -7.24 -38.78 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.65 Total: 4.60 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.36 Total: -7.43 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.94 Total: -57.78 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.54 -7.24 -38.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712545913.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.358 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds