Wall clock time and date at job start Thu Apr 9 2020 13:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.46974 * 2 1 4 4 C 1.48186 * 111.07554 * 269.29036 * 3 2 1 5 5 C 1.53935 * 86.22269 * 222.53731 * 4 3 2 6 6 C 1.47956 * 111.00124 * 169.99985 * 3 2 1 7 7 H 1.09002 * 113.76161 * 23.15225 * 6 3 2 8 8 C 1.53005 * 113.76341 * 251.90233 * 6 3 2 9 9 N 1.46505 * 109.46904 * 56.97703 * 8 6 3 10 10 C 1.36931 * 119.99788 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99680 * 179.72358 * 10 9 8 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00121 * 14 12 10 16 16 H 1.48501 * 109.47062 * 210.00072 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99871 * 14 12 10 18 18 H 1.08991 * 109.47386 * 299.99673 * 1 2 3 19 19 H 1.08999 * 109.46948 * 60.00555 * 1 2 3 20 20 H 1.09001 * 109.46745 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.47278 * 240.00093 * 2 1 3 22 22 H 1.08997 * 109.47529 * 119.99914 * 2 1 3 23 23 H 1.09000 * 113.82151 * 108.19211 * 4 3 2 24 24 H 1.09003 * 113.75957 * 336.87385 * 4 3 2 25 25 H 1.09006 * 113.73467 * 269.26898 * 5 4 3 26 26 H 1.08999 * 113.82695 * 138.00382 * 5 4 3 27 27 H 1.09003 * 109.46946 * 296.98462 * 8 6 3 28 28 H 1.08993 * 109.47679 * 176.98005 * 8 6 3 29 29 H 0.97000 * 119.99792 * 0.02562 * 9 8 6 30 30 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.2134 1.8817 -1.3826 5 6 3.5264 2.4990 -0.8682 6 6 3.4789 1.4315 0.2399 7 1 3.9961 0.5074 -0.0181 8 6 3.8596 1.9620 1.6236 9 7 3.2173 1.1427 2.6544 10 6 3.4135 1.4307 3.9786 11 1 4.0415 2.2621 4.2632 12 6 2.8003 0.6579 4.9552 13 7 2.0346 -0.3548 4.6084 14 14 3.0618 1.0555 6.7616 15 1 2.0187 2.0107 7.2142 16 1 2.9708 -0.1924 7.5613 17 1 4.4038 1.6644 6.9452 18 1 -0.3634 0.5137 0.8899 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.4734 2.6193 -1.6932 24 1 2.3587 1.0898 -2.1174 25 1 3.4168 3.5190 -0.4997 26 1 4.3658 2.3828 -1.5537 27 1 3.5264 2.9953 1.7209 28 1 4.9418 1.9163 1.7452 29 1 2.6530 0.3963 2.3988 30 1 1.6064 -0.8951 5.2908 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712545913.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:43 Heat of formation + Delta-G solvation = 18.284329 kcal Electronic energy + Delta-G solvation = -11488.964511 eV Core-core repulsion = 9512.519692 eV Total energy + Delta-G solvation = -1976.444820 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.88464 -36.26950 -33.79594 -32.91561 -28.95177 -28.02318 -25.52171 -23.44640 -22.70951 -20.53490 -19.16212 -17.07126 -16.75234 -16.40680 -15.67411 -15.07893 -14.80901 -14.54307 -14.03700 -13.26672 -13.18596 -13.00229 -12.87761 -12.67549 -12.23288 -12.12135 -12.01761 -11.57789 -11.41208 -11.33170 -10.92538 -9.59325 -8.95513 -7.93169 -5.20886 1.45664 1.48643 1.56800 2.56141 2.98589 3.39833 3.62366 3.84334 4.02561 4.26808 4.37150 4.41372 4.49761 4.54955 4.69435 4.80939 4.86620 4.93969 5.01719 5.08946 5.21200 5.26800 5.40102 5.47707 5.65067 6.27760 6.29836 7.35500 8.14694 8.38913 9.30700 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052200 B = 0.010975 C = 0.009423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.268126 B = 2550.706528 C = 2970.615790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.020 3.980 3 N -0.494 5.494 4 C 0.005 3.995 5 C -0.122 4.122 6 C 0.021 3.979 7 H 0.075 0.925 8 C 0.167 3.833 9 N -0.741 5.741 10 C -0.246 4.246 11 H 0.074 0.926 12 C -0.078 4.078 13 N -0.970 5.970 14 Si 0.976 3.024 15 H -0.288 1.288 16 H -0.294 1.294 17 H -0.268 1.268 18 H 0.034 0.966 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.042 0.958 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.018 0.982 28 H 0.024 0.976 29 H 0.376 0.624 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 3.113 -12.706 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 N -0.217 5.217 4 C -0.123 4.123 5 C -0.160 4.160 6 C -0.089 4.089 7 H 0.093 0.907 8 C 0.040 3.960 9 N -0.385 5.385 10 C -0.378 4.378 11 H 0.092 0.908 12 C -0.270 4.270 13 N -0.621 5.621 14 Si 0.804 3.196 15 H -0.215 1.215 16 H -0.220 1.220 17 H -0.193 1.193 18 H 0.053 0.947 19 H 0.086 0.914 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.209 0.791 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.828 3.530 -12.125 12.656 hybrid contribution 0.209 -0.878 0.740 1.167 sum 1.037 2.652 -11.386 11.736 Atomic orbital electron populations 1.21548 0.94262 1.01578 1.01455 1.22571 0.97478 0.90712 1.00074 1.68558 1.14459 1.19559 1.19140 1.24032 0.97755 1.00049 0.90502 1.23294 0.98250 0.98462 0.96003 1.23621 0.90144 0.99356 0.95732 0.90730 1.20741 0.94684 0.93633 0.86941 1.42514 1.58236 1.35989 1.01717 1.19696 1.23200 1.10501 0.84428 0.90823 1.25587 1.00580 0.98526 1.02327 1.69835 1.37325 1.21758 1.33146 0.85106 0.78001 0.76559 0.79896 1.21535 1.22015 1.19315 0.94688 0.91450 0.91642 0.92489 0.93941 0.88780 0.89871 0.89298 0.88512 0.96404 0.95776 0.79098 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 10.22 71.98 0.74 -3.37 16 2 C 0.02 0.69 5.32 86.30 0.46 1.15 16 3 N -0.49 -17.06 5.80 -880.67 -5.10 -22.17 16 4 C 0.00 0.12 7.97 86.36 0.69 0.81 16 5 C -0.12 -3.01 7.84 31.24 0.25 -2.77 16 6 C 0.02 0.72 3.41 45.02 0.15 0.88 16 7 H 0.07 2.48 7.92 -2.39 -0.02 2.47 16 8 C 0.17 7.22 6.41 86.38 0.55 7.78 16 9 N -0.74 -40.55 5.53 -343.44 -1.90 -42.45 16 10 C -0.25 -14.59 9.99 84.04 0.84 -13.75 16 11 H 0.07 4.18 7.83 -2.91 -0.02 4.15 16 12 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 13 N -0.97 -61.74 13.06 21.65 0.28 -61.45 16 14 Si 0.98 47.91 29.55 68.60 2.03 49.94 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 16 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 19 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.06 1.62 7.38 -2.38 -0.02 1.60 16 22 H 0.04 1.79 6.42 -2.39 -0.02 1.77 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.08 1.70 7.48 -2.39 -0.02 1.69 16 25 H 0.09 2.24 7.92 -2.38 -0.02 2.22 16 26 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.02 0.80 7.87 -2.39 -0.02 0.78 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.38 21.65 5.67 -92.71 -0.53 21.13 16 30 H 0.25 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -68.12 247.58 0.03 -68.10 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.58 Total: 21.54 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 4.14 Total: -13.51 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -6.72 Total: -126.06 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -68.12 0.03 -68.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712545913.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.380 kcal (2) G-P(sol) polarization free energy of solvation -68.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds