Wall clock time and date at job start Thu Apr 9 2020 13:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00411 * 2 1 4 4 H 1.48495 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46796 * 299.99944 * 3 2 1 6 6 H 1.48496 * 109.47127 * 59.99355 * 3 2 1 7 7 C 1.38818 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99916 * 195.68025 * 7 2 1 9 9 N 1.36935 * 119.99799 * 15.68556 * 7 2 1 10 10 C 1.44587 * 118.64250 * 206.47851 * 9 7 2 11 11 C 1.54868 * 109.59408 * 270.70425 * 10 9 7 12 12 C 1.47097 * 110.32045 * 288.73145 * 11 10 9 13 13 C 1.52564 * 114.33021 * 62.80581 * 12 11 10 14 14 H 1.09008 * 109.48977 * 34.95077 * 13 12 11 15 15 N 1.46896 * 109.49260 * 155.02098 * 13 12 11 16 16 C 1.50883 * 109.35826 * 274.98997 * 13 12 11 17 17 C 1.47608 * 118.64706 * 26.45328 * 9 7 2 18 18 H 0.97003 * 119.99776 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.45091 * 150.66470 * 10 9 7 20 20 H 1.09000 * 109.45001 * 30.73893 * 10 9 7 21 21 H 1.08996 * 109.32311 * 168.47257 * 11 10 9 22 22 H 1.08996 * 109.19264 * 48.90068 * 11 10 9 23 23 H 1.08998 * 108.51211 * 184.05917 * 12 11 10 24 24 H 1.09000 * 108.51293 * 301.54921 * 12 11 10 25 25 H 1.00907 * 110.99943 * 180.02562 * 15 13 12 26 26 H 1.00903 * 110.99906 * 303.95376 * 15 13 12 27 27 H 1.09001 * 109.36481 * 331.69150 * 16 13 12 28 28 H 1.09004 * 109.36682 * 212.07201 * 16 13 12 29 29 H 1.09003 * 108.94572 * 258.57966 * 17 9 7 30 30 H 1.08996 * 108.94267 * 17.29090 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0600 -1.2195 0.2533 9 7 1.3637 -2.3661 -0.3196 10 6 1.8693 -3.6099 0.2169 11 6 2.9226 -4.2031 -0.7512 12 6 2.2701 -4.7077 -1.9691 13 6 1.5615 -3.6365 -2.7924 14 1 2.1210 -2.7028 -2.7331 15 7 1.4782 -4.0703 -4.1934 16 6 0.1705 -3.4252 -2.2473 17 6 0.1791 -2.2992 -1.1976 18 1 -0.4850 0.8401 -0.0004 19 1 1.0468 -4.3153 0.3349 20 1 2.3311 -3.4257 1.1870 21 1 3.4463 -5.0214 -0.2570 22 1 3.6387 -3.4269 -1.0208 23 1 3.0256 -5.1821 -2.5953 24 1 1.5390 -5.4636 -1.6822 25 1 1.0129 -3.3767 -4.7597 26 1 2.3936 -4.2821 -4.5614 27 1 -0.1804 -4.3478 -1.7849 28 1 -0.5000 -3.1540 -3.0628 29 1 -0.7197 -2.3785 -0.5860 30 1 0.1734 -1.3379 -1.7114 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885243545.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:59 Heat of formation + Delta-G solvation = 12.997927 kcal Electronic energy + Delta-G solvation = -11987.402278 eV Core-core repulsion = 10010.728223 eV Total energy + Delta-G solvation = -1976.674055 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.08320 -34.46674 -32.46881 -30.73750 -29.29532 -25.64314 -23.47717 -22.95710 -19.59318 -19.03440 -16.56137 -15.48151 -14.95186 -14.48082 -14.16608 -13.52159 -13.13923 -12.67940 -12.32232 -11.90349 -11.30903 -11.03362 -10.83967 -10.77649 -10.22808 -10.12127 -9.99216 -9.76164 -9.62428 -9.47896 -8.40014 -8.18207 -6.61203 -5.74881 -3.18037 3.36983 3.45159 3.47208 4.52269 4.96415 5.34777 5.48443 5.54319 5.62417 6.00350 6.08612 6.24202 6.38995 6.51656 6.61917 6.66058 6.78505 6.81258 6.86257 6.97253 7.13380 7.46444 7.65078 7.74826 7.84089 7.87217 8.50899 9.28046 9.95833 10.41287 11.32489 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.047787 B = 0.014062 C = 0.013267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.797662 B = 1990.751583 C = 2110.017033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.093 4.093 13 C 0.100 3.900 14 H 0.048 0.952 15 N -0.854 5.854 16 C -0.132 4.132 17 C 0.179 3.821 18 H 0.252 0.748 19 H 0.032 0.968 20 H 0.044 0.956 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.335 0.665 26 H 0.330 0.670 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 -5.887 -4.494 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.029 3.971 11 C -0.187 4.187 12 C -0.131 4.131 13 C -0.011 4.011 14 H 0.066 0.934 15 N -0.383 5.383 16 C -0.171 4.171 17 C 0.053 3.947 18 H 0.062 0.938 19 H 0.050 0.950 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.141 0.859 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.423 -6.363 -4.190 7.995 hybrid contribution 1.007 1.733 -0.274 2.023 sum 3.430 -4.629 -4.464 7.289 Atomic orbital electron populations 1.70087 1.05191 1.25196 1.54468 1.25031 0.95266 0.98297 1.01013 0.86274 0.79367 0.84213 0.77250 1.20329 1.21673 1.21734 1.19265 0.92413 0.85086 1.41804 0.91747 1.43666 1.32365 1.01886 1.53384 1.20693 0.94006 0.88313 0.94085 1.21481 1.00157 0.99589 0.97489 1.20286 0.98813 0.97611 0.96381 1.20762 0.97221 0.96635 0.86442 0.93389 1.59000 1.25102 1.50231 1.03969 1.22078 0.95179 1.00638 0.99254 1.21002 0.88638 0.95458 0.89594 0.93790 0.94980 0.93783 0.93391 0.92397 0.94157 0.93033 0.85310 0.85887 0.93340 0.92795 0.95658 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 11.01 55.49 0.61 -25.81 16 2 C 0.00 0.06 4.87 -17.43 -0.08 -0.02 16 3 Si 0.90 21.83 29.58 -169.99 -5.03 16.81 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.26 -7.04 9.44 -15.06 -0.14 -7.18 16 8 H 0.06 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.86 2.27 -172.08 -0.39 -15.25 16 10 C 0.16 3.37 5.66 -4.08 -0.02 3.35 16 11 C -0.15 -2.70 5.74 -28.58 -0.16 -2.87 16 12 C -0.09 -1.63 4.82 -29.79 -0.14 -1.78 16 13 C 0.10 1.85 2.86 -69.00 -0.20 1.65 16 14 H 0.05 1.03 7.48 -51.92 -0.39 0.64 16 15 N -0.85 -13.25 9.17 -5.77 -0.05 -13.30 16 16 C -0.13 -2.64 5.39 -27.30 -0.15 -2.79 16 17 C 0.18 4.35 4.66 -2.94 -0.01 4.34 16 18 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 19 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 20 H 0.04 0.95 7.99 -51.93 -0.41 0.54 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.04 0.64 7.82 -51.93 -0.41 0.24 16 24 H 0.05 0.90 7.36 -51.93 -0.38 0.52 16 25 H 0.34 4.83 8.88 -39.29 -0.35 4.48 16 26 H 0.33 4.51 8.78 -39.29 -0.35 4.17 16 27 H 0.05 0.95 7.32 -51.93 -0.38 0.57 16 28 H 0.05 1.02 7.85 -51.93 -0.41 0.61 16 29 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 30 H 0.07 1.94 6.33 -51.93 -0.33 1.62 16 LS Contribution 235.20 15.07 3.54 3.54 Total: -1.00 -28.95 235.20 -6.86 -35.81 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.63 Total: 3.48 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.92 Total: -5.29 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.17 Total: -54.36 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -28.95 -6.86 -35.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885243545.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.812 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds