Wall clock time and date at job start Thu Apr 9 2020 13:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47072 * 269.99789 * 3 2 1 5 5 H 1.48501 * 109.47138 * 29.99820 * 3 2 1 6 6 H 1.48504 * 109.47186 * 150.00139 * 3 2 1 7 7 C 1.38817 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99447 * 160.12517 * 7 2 1 9 9 N 1.36936 * 119.99822 * 340.40855 * 7 2 1 10 10 C 1.50173 * 120.53373 * 336.76582 * 9 7 2 11 11 C 1.46244 * 107.52940 * 109.57231 * 10 9 7 12 12 C 1.52528 * 114.27662 * 58.40697 * 11 10 9 13 13 C 1.50132 * 105.41153 * 270.59241 * 12 11 10 14 14 H 1.08988 * 109.21021 * 337.38621 * 13 12 11 15 15 N 1.46902 * 109.20466 * 218.02496 * 13 12 11 16 16 C 1.54844 * 110.81287 * 97.68543 * 13 12 11 17 17 C 1.43432 * 120.53509 * 156.49714 * 9 7 2 18 18 H 0.96994 * 120.00129 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.84435 * 229.07268 * 10 9 7 20 20 H 1.09000 * 109.84919 * 350.06229 * 10 9 7 21 21 H 1.08998 * 108.51997 * 179.64335 * 11 10 9 22 22 H 1.08997 * 108.52067 * 297.16648 * 11 10 9 23 23 H 1.09003 * 110.24855 * 29.56477 * 12 11 10 24 24 H 1.08993 * 110.24870 * 151.47921 * 12 11 10 25 25 H 1.00906 * 110.99680 * 179.97438 * 15 13 12 26 26 H 1.00896 * 111.00179 * 303.95552 * 15 13 12 27 27 H 1.08999 * 109.35608 * 81.34022 * 16 13 12 28 28 H 1.09000 * 109.35578 * 200.92053 * 16 13 12 29 29 H 1.08991 * 108.16203 * 33.29981 * 17 9 7 30 30 H 1.09000 * 108.15621 * 149.87204 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0420 -1.2300 -0.3174 9 7 1.3851 -2.3536 0.3987 10 6 0.1853 -2.2977 1.3002 11 6 -0.9806 -2.6839 0.5063 12 6 -0.8819 -4.0717 -0.1188 13 6 -0.2302 -3.8620 -1.4549 14 1 -0.3804 -2.8293 -1.7691 15 7 -0.8464 -4.7613 -2.4396 16 6 1.2885 -4.1543 -1.3782 17 6 1.8620 -3.6320 -0.0432 18 1 -0.4850 0.8400 -0.0004 19 1 0.3139 -2.9920 2.1307 20 1 0.0550 -1.2846 1.6806 21 1 -1.8613 -2.6549 1.1479 22 1 -1.1135 -1.9533 -0.2916 23 1 -0.2671 -4.7226 0.5029 24 1 -1.8761 -4.5002 -0.2447 25 1 -0.4276 -4.6422 -3.3499 26 1 -0.7885 -5.7223 -2.1376 27 1 1.4534 -5.2295 -1.4481 28 1 1.7941 -3.6588 -2.2070 29 1 2.9457 -3.5740 -0.1441 30 1 1.6372 -4.3648 0.7318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885243546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:00 Heat of formation + Delta-G solvation = 1.737112 kcal Electronic energy + Delta-G solvation = -12112.647588 eV Core-core repulsion = 10135.485227 eV Total energy + Delta-G solvation = -1977.162361 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.80456 -36.19302 -33.52338 -33.29190 -30.36850 -27.66287 -25.59449 -24.06843 -21.70846 -20.51172 -18.55560 -16.96061 -16.54007 -16.27486 -15.67602 -15.29305 -14.93944 -14.07148 -13.80469 -13.30105 -13.21841 -13.17890 -12.66672 -12.33608 -11.97116 -11.81731 -11.71058 -11.33014 -11.16280 -11.08645 -10.43600 -9.51409 -8.62625 -7.81831 -5.23200 1.46308 1.49122 1.57773 2.54382 3.30392 3.62429 3.81229 4.07550 4.18757 4.46909 4.61016 4.67984 4.75799 4.88322 4.92927 5.15857 5.18553 5.32603 5.38280 5.51769 5.56939 5.67182 5.82712 6.20124 6.36182 6.43343 6.74622 7.18784 7.92312 8.42760 9.22154 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053574 B = 0.014302 C = 0.013725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.516960 B = 1957.326202 C = 2039.607198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.044 4.044 3 Si 0.958 3.042 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.264 4.264 8 H 0.061 0.939 9 N -0.602 5.602 10 C 0.168 3.832 11 C -0.122 4.122 12 C -0.096 4.096 13 C 0.110 3.890 14 H 0.041 0.959 15 N -0.848 5.848 16 C -0.165 4.165 17 C 0.155 3.845 18 H 0.247 0.753 19 H 0.024 0.976 20 H 0.056 0.944 21 H 0.035 0.965 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.339 0.661 26 H 0.344 0.656 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.025 0.975 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 -8.067 -0.635 8.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.240 4.240 3 Si 0.787 3.213 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.395 4.395 8 H 0.079 0.921 9 N -0.324 5.324 10 C 0.045 3.955 11 C -0.161 4.161 12 C -0.134 4.134 13 C -0.001 4.001 14 H 0.059 0.941 15 N -0.377 5.377 16 C -0.208 4.208 17 C 0.026 3.974 18 H 0.056 0.944 19 H 0.042 0.958 20 H 0.075 0.925 21 H 0.053 0.947 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.151 0.849 26 H 0.157 0.843 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.615 -7.524 -0.457 7.563 hybrid contribution 1.318 0.843 -0.323 1.598 sum 0.703 -6.681 -0.780 6.763 Atomic orbital electron populations 1.70148 1.05994 1.25230 1.54868 1.25558 0.96003 1.00768 1.01664 0.85429 0.78166 0.80453 0.77242 1.21653 1.21881 1.20103 1.19409 0.93679 0.86784 1.39586 0.92142 1.44410 1.33980 1.01402 1.52605 1.20094 0.85857 0.99030 0.90558 1.20757 0.97672 0.96654 1.01000 1.20983 1.00101 0.96942 0.95369 1.21202 0.91122 0.95437 0.92344 0.94106 1.59161 1.62785 1.10135 1.05576 1.23504 0.97394 0.99811 1.00053 1.20358 0.95922 0.87319 0.93810 0.94356 0.95750 0.92541 0.94652 0.91819 0.91678 0.91178 0.84861 0.84275 0.90631 0.94784 0.95682 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.47 9.42 21.65 0.20 -52.27 16 2 C -0.04 -2.43 4.91 84.86 0.42 -2.01 16 3 Si 0.96 45.05 29.60 68.60 2.03 47.08 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.26 -14.55 9.62 84.03 0.81 -13.75 16 8 H 0.06 3.32 7.89 -2.91 -0.02 3.29 16 9 N -0.60 -29.89 2.61 -708.85 -1.85 -31.74 16 10 C 0.17 7.99 5.25 83.58 0.44 8.43 16 11 C -0.12 -5.38 5.02 28.36 0.14 -5.24 16 12 C -0.10 -3.53 5.37 29.51 0.16 -3.37 16 13 C 0.11 4.18 3.02 44.62 0.13 4.31 16 14 H 0.04 1.99 6.82 -2.39 -0.02 1.97 16 15 N -0.85 -25.73 9.11 -169.91 -1.55 -27.28 16 16 C -0.16 -5.99 5.97 31.70 0.19 -5.80 16 17 C 0.15 6.38 5.13 87.42 0.45 6.83 16 18 H 0.25 13.88 8.31 -92.71 -0.77 13.10 16 19 H 0.02 1.05 8.13 -2.39 -0.02 1.03 16 20 H 0.06 3.04 6.05 -2.39 -0.01 3.03 16 21 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.06 3.35 5.29 -2.39 -0.01 3.34 16 23 H 0.06 2.22 6.28 -2.39 -0.01 2.20 16 24 H 0.07 2.38 7.96 -2.39 -0.02 2.36 16 25 H 0.34 9.45 9.03 -89.69 -0.81 8.64 16 26 H 0.34 8.62 8.97 -89.70 -0.80 7.82 16 27 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.02 1.04 7.99 -2.39 -0.02 1.02 16 30 H 0.05 1.72 6.89 -2.39 -0.02 1.70 16 Total: -1.00 -59.22 230.38 1.09 -58.13 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.48 Total: 16.67 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 2.74 Total: -10.59 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.20 Total: -111.29 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -59.22 1.09 -58.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885243546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.864 kcal (2) G-P(sol) polarization free energy of solvation -59.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds