Wall clock time and date at job start Thu Apr 9 2020 13:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86798 * 120.00350 * 2 1 4 4 H 1.48505 * 109.47091 * 270.00279 * 3 2 1 5 5 H 1.48505 * 109.46990 * 30.00080 * 3 2 1 6 6 H 1.48497 * 109.47286 * 150.00139 * 3 2 1 7 7 C 1.38638 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00469 * 179.97438 * 7 2 1 9 9 O 1.34935 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.42901 * 116.99998 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.53595 * 332.61322 * 10 9 7 12 12 C 1.54885 * 110.48558 * 95.22324 * 10 9 7 13 13 C 1.54889 * 102.74536 * 156.61954 * 12 10 9 14 14 C 1.54263 * 104.19909 * 322.05793 * 13 12 10 15 15 C 1.53878 * 106.59769 * 23.61065 * 14 13 12 16 16 H 1.08998 * 110.03112 * 240.67112 * 15 14 13 17 17 C 1.52998 * 110.03437 * 119.28209 * 15 14 13 18 18 N 1.46905 * 109.46978 * 66.45534 * 17 15 14 19 19 H 0.97001 * 119.99755 * 359.97438 * 1 2 3 20 20 H 1.08998 * 110.76119 * 38.30955 * 12 10 9 21 21 H 1.09001 * 110.91524 * 275.00624 * 12 10 9 22 22 H 1.09004 * 110.48937 * 203.37855 * 13 12 10 23 23 H 1.09005 * 110.60107 * 80.79568 * 13 12 10 24 24 H 1.08995 * 110.03539 * 264.32732 * 14 13 12 25 25 H 1.08997 * 110.07295 * 142.91345 * 14 13 12 26 26 H 1.09002 * 109.47288 * 306.45434 * 17 15 14 27 27 H 1.08995 * 109.47151 * 186.45494 * 17 15 14 28 28 H 1.00901 * 110.99869 * 180.02562 * 18 17 15 29 29 H 1.00896 * 110.99543 * 303.95346 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2007 -0.0010 9 8 1.3343 -2.3692 -0.0005 10 6 2.1126 -3.5677 -0.0005 11 1 3.0810 -3.3947 -0.4701 12 6 2.2970 -4.0942 1.4443 13 6 2.5815 -5.6009 1.2252 14 6 1.6552 -5.9948 0.0563 15 6 1.3570 -4.7020 -0.7231 16 1 0.2857 -4.5010 -0.7170 17 6 1.8576 -4.8309 -2.1632 18 7 1.0716 -5.8544 -2.8651 19 1 -0.4850 0.8401 0.0004 20 1 1.3860 -3.9538 2.0260 21 1 3.1428 -3.6081 1.9306 22 1 2.3302 -6.1707 2.1199 23 1 3.6256 -5.7587 0.9545 24 1 0.7287 -6.4208 0.4413 25 1 2.1558 -6.7143 -0.5916 26 1 2.9086 -5.1200 -2.1580 27 1 1.7465 -3.8742 -2.6734 28 1 1.3835 -5.9587 -3.8190 29 1 1.1062 -6.7358 -2.3752 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084240390.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:21 Heat of formation + Delta-G solvation = -77.301042 kcal Electronic energy + Delta-G solvation = -11612.202764 eV Core-core repulsion = 9533.894389 eV Total energy + Delta-G solvation = -2078.308374 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.96060 -37.16740 -34.88942 -33.69349 -29.70672 -28.74674 -26.55613 -24.31866 -21.59195 -20.53311 -19.61575 -17.70847 -17.23351 -16.16366 -15.73317 -15.50028 -15.24306 -14.37885 -14.19033 -13.81401 -13.52954 -13.40903 -12.84066 -12.60794 -12.11235 -11.96789 -11.71588 -11.58912 -11.33772 -11.23803 -11.05489 -10.07570 -9.59445 -8.15788 -5.84232 1.38212 1.45158 1.54160 2.33634 3.16457 3.44970 3.69737 3.80183 3.98285 4.22503 4.36625 4.41600 4.48533 4.59653 4.76354 4.82438 4.94437 5.06967 5.11885 5.18055 5.27627 5.37538 5.45888 5.49345 6.23279 6.24358 6.67592 7.27212 8.12649 9.09587 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049580 B = 0.011073 C = 0.009926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.610793 B = 2528.162118 C = 2820.084526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.046 4.046 3 Si 1.004 2.996 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.371 4.371 8 H 0.070 0.930 9 O -0.327 6.327 10 C 0.083 3.917 11 H 0.042 0.958 12 C -0.143 4.143 13 C -0.110 4.110 14 C -0.105 4.105 15 C -0.088 4.088 16 H 0.049 0.951 17 C 0.080 3.920 18 N -0.854 5.854 19 H 0.259 0.741 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.351 0.649 29 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 -11.297 -1.210 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.239 4.239 3 Si 0.826 3.174 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.450 4.450 8 H 0.088 0.912 9 O -0.243 6.243 10 C 0.024 3.976 11 H 0.060 0.940 12 C -0.181 4.181 13 C -0.148 4.148 14 C -0.143 4.143 15 C -0.107 4.107 16 H 0.068 0.932 17 C -0.051 4.051 18 N -0.387 5.387 19 H 0.068 0.932 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.164 0.836 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.230 -10.746 -1.079 12.468 hybrid contribution 1.100 0.601 -0.087 1.257 sum 7.330 -10.145 -1.167 12.570 Atomic orbital electron populations 1.70210 1.07623 1.27053 1.53836 1.26221 0.96723 1.02034 0.98885 0.84786 0.77654 0.76387 0.78602 1.19607 1.20433 1.18249 1.21366 0.90590 0.83751 1.49289 0.91237 1.85635 1.33960 1.11825 1.92853 1.23031 0.93341 0.86127 0.95107 0.93952 1.22918 1.00547 0.97451 0.97225 1.22247 1.00088 0.93545 0.98873 1.22091 1.00150 0.95207 0.96841 1.21763 0.99572 0.94824 0.94561 0.93201 1.21630 0.94677 0.95289 0.93463 1.58586 1.61189 1.11984 1.06893 0.93206 0.93286 0.92351 0.89847 0.90263 0.91159 0.89601 0.93944 0.93941 0.83583 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.14 13.67 21.61 0.30 -61.84 15 2 C -0.05 -2.81 5.49 84.83 0.47 -2.34 15 3 Si 1.00 46.35 29.55 68.60 2.03 48.38 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 7 C -0.37 -22.61 9.82 67.92 0.67 -21.94 15 8 H 0.07 3.94 7.63 -2.91 -0.02 3.92 15 9 O -0.33 -19.78 9.49 -82.05 -0.78 -20.55 15 10 C 0.08 3.76 2.93 31.67 0.09 3.86 15 11 H 0.04 1.88 7.52 -2.39 -0.02 1.86 15 12 C -0.14 -5.53 6.62 31.88 0.21 -5.32 15 13 C -0.11 -2.99 6.83 31.67 0.22 -2.78 15 14 C -0.11 -2.88 5.95 31.32 0.19 -2.70 15 15 C -0.09 -3.33 2.92 -10.07 -0.03 -3.36 15 16 H 0.05 2.26 8.07 -2.39 -0.02 2.24 15 17 C 0.08 2.66 5.91 86.30 0.51 3.17 15 18 N -0.85 -22.89 9.62 -186.71 -1.80 -24.68 15 19 H 0.26 15.90 8.31 -92.71 -0.77 15.13 15 20 H 0.05 2.08 8.14 -2.39 -0.02 2.06 15 21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.08 1.92 8.14 -2.38 -0.02 1.90 15 23 H 0.08 1.86 8.14 -2.38 -0.02 1.84 15 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.09 1.82 6.89 -2.39 -0.02 1.81 15 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 15 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 28 H 0.35 7.63 9.08 -89.69 -0.81 6.82 15 29 H 0.35 7.59 7.66 -89.70 -0.69 6.90 15 Total: -1.00 -73.89 242.28 1.70 -72.19 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.36 Total: 17.93 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 2.32 Total: -31.41 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.50 Total: -86.53 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.78 Total: -20.55 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.89 1.70 -72.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084240390.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.113 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds