Wall clock time and date at job start Thu Apr 9 2020 13:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09005 * 110.80786 * 57.16905 * 3 2 1 5 5 C 1.54997 * 110.90617 * 293.54324 * 3 2 1 6 6 O 1.44380 * 103.49189 * 204.77880 * 5 3 2 7 7 C 1.43748 * 106.97505 * 40.05798 * 6 5 3 8 8 C 1.54099 * 107.29455 * 333.49150 * 7 6 5 9 9 H 1.09003 * 110.48521 * 243.35211 * 8 7 6 10 10 N 1.46500 * 110.49339 * 120.70160 * 8 7 6 11 11 C 1.36936 * 119.99813 * 90.23020 * 10 8 7 12 12 H 1.08005 * 120.00181 * 0.02562 * 11 10 8 13 13 C 1.38814 * 119.99916 * 180.02562 * 11 10 8 14 14 N 1.31622 * 119.99767 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99966 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46952 * 119.99945 * 15 13 11 18 18 H 1.48500 * 109.47304 * 239.99834 * 15 13 11 19 19 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 20 20 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 22 22 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 23 23 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 24 24 H 1.08993 * 110.61983 * 323.28199 * 5 3 2 25 25 H 1.09007 * 110.61698 * 86.28078 * 5 3 2 26 26 H 1.08998 * 109.87655 * 92.91080 * 7 6 5 27 27 H 1.08996 * 109.87897 * 213.91243 * 7 6 5 28 28 H 0.96991 * 119.99926 * 270.23814 * 10 8 7 29 29 H 0.97002 * 119.99449 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6483 1.9917 0.8562 5 6 1.6791 2.1567 -1.3274 6 8 2.6775 3.1942 -1.4339 7 6 3.9233 2.6241 -0.9989 8 6 3.5876 1.4813 -0.0212 9 1 3.9773 1.7026 0.9724 10 7 4.1256 0.2106 -0.5132 11 6 5.3874 -0.1830 -0.1552 12 1 5.9857 0.4431 0.4902 13 6 5.8975 -1.3868 -0.6218 14 7 5.1681 -2.1500 -1.4080 15 14 7.6189 -1.9234 -0.1341 16 1 8.2257 -0.8962 0.7502 17 1 7.5473 -3.2186 0.5890 18 1 8.4519 -2.0825 -1.3531 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.7524 1.4659 -2.1672 25 1 0.6803 2.5896 -1.2711 26 1 4.4698 2.2301 -1.8558 27 1 4.5220 3.3826 -0.4946 28 1 3.5882 -0.3517 -1.0926 29 1 5.5247 -2.9909 -1.7343 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575481827.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:44 Heat of formation + Delta-G solvation = -43.102072 kcal Electronic energy + Delta-G solvation = -11781.243331 eV Core-core repulsion = 9704.417935 eV Total energy + Delta-G solvation = -2076.825396 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08548 -34.74006 -33.41555 -31.06342 -28.20745 -27.34063 -23.78276 -23.26894 -21.18489 -19.01017 -17.47085 -15.63154 -15.42278 -14.71223 -14.32707 -13.71285 -13.49903 -13.09277 -12.69165 -12.11146 -11.69172 -11.60488 -11.01513 -10.81115 -10.80200 -10.41028 -10.21668 -10.11284 -9.80351 -9.57950 -9.08218 -8.95251 -7.02662 -5.82073 -3.11370 3.40726 3.46746 3.48767 4.50086 4.58722 5.17492 5.29171 5.42185 5.53815 5.67278 5.69079 5.79726 5.90755 6.01428 6.11768 6.21195 6.29555 6.41708 6.42831 6.63409 6.65330 6.88482 6.95919 7.44696 7.67872 8.36884 9.48183 10.03897 10.39120 11.40458 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.047617 B = 0.012209 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.885681 B = 2292.927588 C = 2666.796465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C -0.130 4.130 4 H 0.077 0.923 5 C 0.055 3.945 6 O -0.393 6.393 7 C 0.020 3.980 8 C 0.149 3.851 9 H 0.064 0.936 10 N -0.716 5.716 11 C -0.244 4.244 12 H 0.072 0.928 13 C -0.012 4.012 14 N -0.931 5.931 15 Si 0.908 3.092 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.291 1.291 19 H 0.049 0.951 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.387 0.613 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 5.508 2.249 9.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.150 4.150 4 H 0.095 0.905 5 C -0.022 4.022 6 O -0.312 6.312 7 C -0.060 4.060 8 C 0.037 3.963 9 H 0.082 0.918 10 N -0.358 5.358 11 C -0.375 4.375 12 H 0.090 0.910 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.739 3.261 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.218 1.218 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.224 0.776 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.706 5.677 2.245 9.069 hybrid contribution 0.911 -0.735 0.075 1.173 sum -5.795 4.943 2.320 7.962 Atomic orbital electron populations 1.21835 0.96893 1.01159 1.00986 1.21317 0.93913 0.95338 1.03715 1.22969 0.97197 0.96978 0.97849 0.90492 1.23520 0.92022 0.89985 0.96691 1.88739 1.19149 1.35530 1.87764 1.24282 0.85867 0.96738 0.99071 1.21539 0.90997 0.87598 0.96139 0.91841 1.42587 1.16107 1.18746 1.58408 1.19329 0.91373 1.02261 1.24547 0.91037 1.24753 0.98536 0.97365 1.00127 1.69670 1.36792 1.13558 1.37927 0.86107 0.84148 0.78242 0.77618 1.20524 1.21841 1.21830 0.93178 0.93016 0.93338 0.91292 0.90813 0.92484 0.90202 0.91735 0.91313 0.77608 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.76 37.16 0.36 -1.68 15 2 C -0.10 -1.79 4.66 -26.73 -0.12 -1.91 15 3 C -0.13 -2.23 3.13 -88.61 -0.28 -2.50 15 4 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 5 C 0.05 0.91 6.36 38.21 0.24 1.15 15 6 O -0.39 -7.50 11.52 -35.23 -0.41 -7.91 15 7 C 0.02 0.40 7.50 37.73 0.28 0.68 15 8 C 0.15 3.04 3.60 -66.40 -0.24 2.80 15 9 H 0.06 1.29 8.09 -51.93 -0.42 0.87 15 10 N -0.72 -17.65 4.47 -51.94 -0.23 -17.88 15 11 C -0.24 -6.68 9.96 -15.06 -0.15 -6.83 15 12 H 0.07 1.90 7.83 -52.48 -0.41 1.49 15 13 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 15 14 N -0.93 -27.69 13.06 55.49 0.72 -26.96 15 15 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 15 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 17 H -0.29 -7.16 7.11 56.52 0.40 -6.75 15 18 H -0.29 -7.18 7.11 56.52 0.40 -6.77 15 19 H 0.05 0.62 7.46 -51.93 -0.39 0.24 15 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.07 1.43 6.25 -51.93 -0.32 1.10 15 24 H 0.06 0.99 8.02 -51.93 -0.42 0.57 15 25 H 0.08 1.12 8.08 -51.93 -0.42 0.71 15 26 H 0.06 1.40 7.93 -51.93 -0.41 0.99 15 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.39 10.03 5.63 -40.82 -0.23 9.80 15 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 238.71 15.07 3.60 3.60 Total: -1.00 -29.24 238.71 -5.61 -34.84 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.27 Total: 5.88 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.00 Total: -8.72 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.49 Total: -44.84 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.41 Total: -7.91 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.24 -5.61 -34.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575481827.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.257 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds