Wall clock time and date at job start Thu Apr 9 2020 13:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09005 * 110.80786 * 57.16905 * 3 2 1 5 5 C 1.54997 * 110.90617 * 293.54324 * 3 2 1 6 6 O 1.44380 * 103.49189 * 204.77880 * 5 3 2 7 7 C 1.43748 * 106.97505 * 40.05798 * 6 5 3 8 8 C 1.54099 * 107.29455 * 333.49150 * 7 6 5 9 9 H 1.09003 * 110.48521 * 243.35211 * 8 7 6 10 10 N 1.46500 * 110.49339 * 120.70160 * 8 7 6 11 11 C 1.36936 * 119.99813 * 90.23020 * 10 8 7 12 12 H 1.08005 * 120.00181 * 0.02562 * 11 10 8 13 13 C 1.38814 * 119.99916 * 180.02562 * 11 10 8 14 14 N 1.31622 * 119.99767 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99966 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46952 * 119.99945 * 15 13 11 18 18 H 1.48500 * 109.47304 * 239.99834 * 15 13 11 19 19 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 20 20 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 22 22 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 23 23 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 24 24 H 1.08993 * 110.61983 * 323.28199 * 5 3 2 25 25 H 1.09007 * 110.61698 * 86.28078 * 5 3 2 26 26 H 1.08998 * 109.87655 * 92.91080 * 7 6 5 27 27 H 1.08996 * 109.87897 * 213.91243 * 7 6 5 28 28 H 0.96991 * 119.99926 * 270.23814 * 10 8 7 29 29 H 0.97002 * 119.99449 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6483 1.9917 0.8562 5 6 1.6791 2.1567 -1.3274 6 8 2.6775 3.1942 -1.4339 7 6 3.9233 2.6241 -0.9989 8 6 3.5876 1.4813 -0.0212 9 1 3.9773 1.7026 0.9724 10 7 4.1256 0.2106 -0.5132 11 6 5.3874 -0.1830 -0.1552 12 1 5.9857 0.4431 0.4902 13 6 5.8975 -1.3868 -0.6218 14 7 5.1681 -2.1500 -1.4080 15 14 7.6189 -1.9234 -0.1341 16 1 8.2257 -0.8962 0.7502 17 1 7.5473 -3.2186 0.5890 18 1 8.4519 -2.0825 -1.3531 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.7524 1.4659 -2.1672 25 1 0.6803 2.5896 -1.2711 26 1 4.4698 2.2301 -1.8558 27 1 4.5220 3.3826 -0.4946 28 1 3.5882 -0.3517 -1.0926 29 1 5.5247 -2.9909 -1.7343 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575481827.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:44 Heat of formation + Delta-G solvation = -62.556724 kcal Electronic energy + Delta-G solvation = -11782.086948 eV Core-core repulsion = 9704.417935 eV Total energy + Delta-G solvation = -2077.669013 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.60233 -36.43787 -35.05006 -32.94207 -29.78657 -28.89556 -25.71597 -24.69848 -22.70352 -20.52784 -19.44649 -17.22672 -17.07315 -16.22514 -16.12933 -15.33480 -15.22948 -14.70613 -13.99704 -13.56913 -13.37007 -13.06443 -12.82687 -12.63445 -12.26761 -12.17146 -11.96682 -11.57928 -11.40413 -11.21961 -10.98915 -10.58814 -9.05804 -7.96607 -5.25558 1.47374 1.47632 1.57685 2.54352 3.08346 3.36519 3.73818 3.89593 4.00415 4.08315 4.39790 4.45922 4.51391 4.60241 4.67928 4.87871 4.94871 4.97091 5.14339 5.17282 5.28882 5.42404 5.49578 5.56985 5.94862 6.26825 7.32462 8.05811 8.30446 9.26813 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.047617 B = 0.012209 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.885681 B = 2292.927588 C = 2666.796465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.120 4.120 4 H 0.103 0.897 5 C 0.054 3.946 6 O -0.398 6.398 7 C 0.028 3.972 8 C 0.137 3.863 9 H 0.066 0.934 10 N -0.726 5.726 11 C -0.244 4.244 12 H 0.077 0.923 13 C -0.073 4.073 14 N -0.968 5.968 15 Si 0.972 3.028 16 H -0.266 1.266 17 H -0.293 1.293 18 H -0.295 1.295 19 H 0.063 0.937 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.117 0.883 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.378 0.622 29 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 6.641 3.120 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.140 4.140 4 H 0.121 0.879 5 C -0.022 4.022 6 O -0.317 6.317 7 C -0.051 4.051 8 C 0.027 3.973 9 H 0.084 0.916 10 N -0.368 5.368 11 C -0.376 4.376 12 H 0.095 0.905 13 C -0.266 4.266 14 N -0.618 5.618 15 Si 0.802 3.198 16 H -0.190 1.190 17 H -0.221 1.221 18 H -0.222 1.222 19 H 0.082 0.918 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.135 0.865 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.213 0.787 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.434 6.857 3.136 10.588 hybrid contribution 1.082 -1.023 -0.187 1.501 sum -6.351 5.834 2.949 9.114 Atomic orbital electron populations 1.21772 0.93688 1.02029 1.02592 1.21205 0.96639 0.94755 1.01146 1.22955 0.94497 0.97330 0.99183 0.87888 1.23681 0.93102 0.89554 0.95850 1.88739 1.19101 1.36091 1.87780 1.24047 0.86403 0.96853 0.97804 1.21796 0.93511 0.85970 0.96025 0.91605 1.42725 1.15429 1.20179 1.58443 1.19709 0.92357 1.02032 1.23483 0.90508 1.25544 1.02261 0.97861 1.00909 1.69821 1.38461 1.13890 1.39648 0.85086 0.79856 0.77775 0.77103 1.19022 1.22067 1.22234 0.91810 0.92672 0.91377 0.93355 0.93938 0.93704 0.86507 0.94497 0.89466 0.78663 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.76 71.98 0.70 -2.80 15 2 C -0.10 -3.30 4.66 30.60 0.14 -3.16 15 3 C -0.12 -3.87 3.13 -9.49 -0.03 -3.90 15 4 H 0.10 2.83 8.14 -2.38 -0.02 2.81 15 5 C 0.05 1.68 6.36 72.67 0.46 2.15 15 6 O -0.40 -14.37 11.52 -148.98 -1.72 -16.09 15 7 C 0.03 1.09 7.50 72.35 0.54 1.64 15 8 C 0.14 5.47 3.60 45.98 0.17 5.63 15 9 H 0.07 2.59 8.09 -2.39 -0.02 2.57 15 10 N -0.73 -36.17 4.47 -318.25 -1.42 -37.60 15 11 C -0.24 -13.40 9.96 84.03 0.84 -12.57 15 12 H 0.08 4.05 7.83 -2.91 -0.02 4.02 15 13 C -0.07 -4.18 5.50 84.86 0.47 -3.71 15 14 N -0.97 -58.77 13.06 21.65 0.28 -58.48 15 15 Si 0.97 45.91 29.55 68.60 2.03 47.94 15 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 17 H -0.29 -13.85 7.11 99.48 0.71 -13.14 15 18 H -0.30 -14.00 7.11 99.48 0.71 -13.29 15 19 H 0.06 1.39 7.46 -2.39 -0.02 1.37 15 20 H 0.05 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.04 1.67 6.25 -2.39 -0.01 1.66 15 24 H 0.04 1.50 8.02 -2.39 -0.02 1.49 15 25 H 0.12 2.80 8.08 -2.38 -0.02 2.78 15 26 H 0.04 1.61 7.93 -2.39 -0.02 1.59 15 27 H 0.09 3.00 8.14 -2.39 -0.02 2.98 15 28 H 0.38 20.13 5.63 -92.71 -0.52 19.61 15 29 H 0.25 14.78 8.31 -92.71 -0.77 14.01 15 Total: -1.00 -62.19 238.71 3.06 -59.13 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.60 Total: 21.82 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 3.29 Total: -16.72 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -1.14 Total: -96.08 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.72 Total: -16.09 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -62.19 3.06 -59.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575481827.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.428 kcal (2) G-P(sol) polarization free energy of solvation -62.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds