Wall clock time and date at job start Thu Apr 9 2020 13:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.45365 * 2 1 4 4 C 1.53035 * 109.46646 * 240.02126 * 2 1 3 5 5 C 1.53121 * 109.28107 * 180.80536 * 4 2 1 6 6 O 1.42899 * 109.52119 * 297.69132 * 5 4 2 7 7 C 1.50688 * 109.52503 * 177.55945 * 5 4 2 8 8 H 1.08003 * 120.00642 * 244.17812 * 7 5 4 9 9 C 1.37885 * 120.00054 * 64.17370 * 7 5 4 10 10 N 1.31511 * 119.99703 * 6.04103 * 9 7 5 11 11 Si 1.86796 * 120.00157 * 186.03072 * 9 7 5 12 12 H 1.48508 * 109.46904 * 60.00580 * 11 9 7 13 13 H 1.48505 * 109.47459 * 300.00497 * 11 9 7 14 14 H 1.48500 * 109.47232 * 180.02562 * 11 9 7 15 15 C 1.53125 * 109.15965 * 57.65310 * 5 4 2 16 16 C 1.53038 * 109.27969 * 302.35126 * 15 5 4 17 17 N 1.46845 * 109.52496 * 59.17419 * 16 15 5 18 18 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47718 * 299.97908 * 1 2 3 20 20 H 1.09003 * 109.47092 * 59.97709 * 1 2 3 21 21 H 1.09003 * 109.49919 * 60.86532 * 4 2 1 22 22 H 1.08999 * 109.50397 * 300.75118 * 4 2 1 23 23 H 0.96703 * 113.99942 * 179.39591 * 6 5 4 24 24 H 0.97004 * 120.00145 * 2.66325 * 10 9 7 25 25 H 1.09005 * 109.49709 * 62.28674 * 15 5 4 26 26 H 1.08997 * 109.50506 * 182.40446 * 15 5 4 27 27 H 1.09005 * 109.46015 * 299.15783 * 16 15 5 28 28 H 1.08994 * 109.46149 * 179.19598 * 16 15 5 29 29 H 1.00904 * 110.99522 * 174.16312 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2498 5 6 3.5710 -0.7361 -1.2354 6 8 4.0622 0.6051 -1.2784 7 6 4.0784 -1.4969 -2.4331 8 1 4.6326 -2.4137 -2.2955 9 6 3.8352 -1.0228 -3.7048 10 7 3.2657 0.1509 -3.8711 11 14 4.3148 -2.0473 -5.1913 12 1 3.5966 -3.3465 -5.1494 13 1 5.7796 -2.2906 -5.1732 14 1 3.9497 -1.3192 -6.4330 15 6 4.0548 -1.4188 0.0470 16 6 3.4863 -0.6776 1.2593 17 7 2.0192 -0.6916 1.1995 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5135 0.8901 20 1 -0.3633 0.5142 -0.8898 21 1 1.6895 -0.1983 -2.1399 22 1 1.6659 -1.7447 -1.2575 23 1 5.0269 0.6714 -1.2626 24 1 3.0520 0.6999 -3.1005 25 1 3.7124 -2.4536 0.0598 26 1 5.1439 -1.3947 0.0835 27 1 3.8402 0.3534 1.2534 28 1 3.8173 -1.1697 2.1738 29 1 1.6194 -0.2924 2.0355 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575515159.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:50 Heat of formation + Delta-G solvation = -65.458614 kcal Electronic energy + Delta-G solvation = -12211.906900 eV Core-core repulsion = 10134.112052 eV Total energy + Delta-G solvation = -2077.794848 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.48934 -34.97243 -32.23788 -31.47663 -29.60105 -26.27863 -24.88647 -21.83474 -20.69433 -18.69220 -17.24533 -15.65968 -14.98032 -14.41316 -13.75110 -13.69435 -13.39843 -12.68663 -12.04992 -11.76282 -11.52924 -11.26004 -10.89845 -10.75218 -10.46467 -10.20236 -10.18716 -10.03659 -9.91081 -8.95245 -8.39513 -8.05610 -7.68061 -6.20082 -4.09171 3.44903 3.46615 3.65478 4.56106 4.73899 5.36382 5.58984 5.60347 5.79325 5.89622 5.98623 6.04368 6.21008 6.32482 6.39193 6.53967 6.59274 6.68702 6.89694 7.10537 7.26888 7.63095 7.74056 7.94689 8.13939 8.43173 8.97197 9.15790 9.75674 11.14353 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053263 B = 0.014569 C = 0.013156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.567276 B = 1921.387405 C = 2127.807827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 H 0.037 0.963 4 C -0.084 4.084 5 C 0.235 3.765 6 O -0.580 6.580 7 C -0.641 4.641 8 H 0.047 0.953 9 C 0.037 3.963 10 N -0.898 5.898 11 Si 1.060 2.940 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.283 1.283 15 C -0.129 4.129 16 C 0.063 3.937 17 N -0.685 5.685 18 H 0.058 0.942 19 H 0.043 0.957 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.354 0.646 24 H 0.293 0.707 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.027 0.973 28 H 0.056 0.944 29 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 -0.656 6.918 7.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 H 0.055 0.945 4 C -0.122 4.122 5 C 0.196 3.804 6 O -0.384 6.384 7 C -0.679 4.679 8 H 0.066 0.934 9 C -0.172 4.172 10 N -0.535 5.535 11 Si 0.889 3.111 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.208 1.208 15 C -0.167 4.167 16 C -0.066 4.066 17 N -0.316 5.316 18 H 0.077 0.923 19 H 0.062 0.938 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.199 0.801 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.209 -1.160 4.962 5.554 hybrid contribution 0.878 0.672 1.976 2.264 sum -1.331 -0.489 6.939 7.082 Atomic orbital electron populations 1.21826 0.95733 1.01812 1.00686 1.21590 0.93679 0.95980 0.91637 0.94452 1.21575 0.96067 0.99550 0.95010 1.18926 0.90591 0.79719 0.91126 1.86353 1.24312 1.30789 1.96973 1.22353 1.41416 1.11367 0.92791 0.93443 1.25668 0.93973 0.97211 1.00325 1.70622 1.36448 1.09539 1.36857 0.83711 0.76116 0.75268 0.76041 1.21497 1.21595 1.20845 1.22168 0.98742 1.00118 0.95656 1.21856 0.87674 0.98638 0.98446 1.60399 1.07459 1.59428 1.04353 0.92280 0.93829 0.92382 0.91013 0.92028 0.80078 0.89290 0.91881 0.92999 0.95452 0.92575 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.43 37.16 0.35 -2.05 15 2 C 0.08 1.61 2.90 -67.72 -0.20 1.42 15 3 H 0.04 0.81 7.76 -51.93 -0.40 0.41 15 4 C -0.08 -2.01 4.06 -26.65 -0.11 -2.12 15 5 C 0.24 5.86 0.54 -91.65 -0.05 5.81 15 6 O -0.58 -14.48 9.83 -35.23 -0.35 -14.83 15 7 C -0.64 -17.91 8.19 -34.44 -0.28 -18.20 15 8 H 0.05 1.33 7.75 -52.48 -0.41 0.92 15 9 C 0.04 1.06 5.22 -17.82 -0.09 0.96 15 10 N -0.90 -26.97 12.84 55.43 0.71 -26.26 15 11 Si 1.06 25.14 29.91 -169.99 -5.08 20.06 15 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 15 C -0.13 -2.78 5.02 -26.65 -0.13 -2.91 15 16 C 0.06 1.17 6.42 -3.83 -0.02 1.15 15 17 N -0.69 -12.54 6.50 -106.76 -0.69 -13.23 15 18 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 21 H 0.07 1.90 6.18 -51.93 -0.32 1.58 15 22 H 0.06 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.35 8.10 9.04 45.56 0.41 8.51 15 24 H 0.29 8.85 4.85 -40.82 -0.20 8.65 15 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 15 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.03 0.52 7.76 -51.93 -0.40 0.12 15 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 29 H 0.33 5.05 8.79 -39.29 -0.35 4.71 15 LS Contribution 231.33 15.07 3.49 3.49 Total: -1.00 -30.13 231.33 -5.88 -36.02 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.42 Total: 10.70 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.54 Total: -15.94 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.02 Total: -39.49 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.35 Total: -14.83 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.13 -5.88 -36.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575515159.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.442 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds