Wall clock time and date at job start Thu Apr 9 2020 13:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.45365 * 2 1 4 4 C 1.53035 * 109.46646 * 240.02126 * 2 1 3 5 5 C 1.53121 * 109.28107 * 180.80536 * 4 2 1 6 6 O 1.42899 * 109.52119 * 297.69132 * 5 4 2 7 7 C 1.50688 * 109.52503 * 177.55945 * 5 4 2 8 8 H 1.08003 * 120.00642 * 244.17812 * 7 5 4 9 9 C 1.37885 * 120.00054 * 64.17370 * 7 5 4 10 10 N 1.31511 * 119.99703 * 6.04103 * 9 7 5 11 11 Si 1.86796 * 120.00157 * 186.03072 * 9 7 5 12 12 H 1.48508 * 109.46904 * 60.00580 * 11 9 7 13 13 H 1.48505 * 109.47459 * 300.00497 * 11 9 7 14 14 H 1.48500 * 109.47232 * 180.02562 * 11 9 7 15 15 C 1.53125 * 109.15965 * 57.65310 * 5 4 2 16 16 C 1.53038 * 109.27969 * 302.35126 * 15 5 4 17 17 N 1.46845 * 109.52496 * 59.17419 * 16 15 5 18 18 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47718 * 299.97908 * 1 2 3 20 20 H 1.09003 * 109.47092 * 59.97709 * 1 2 3 21 21 H 1.09003 * 109.49919 * 60.86532 * 4 2 1 22 22 H 1.08999 * 109.50397 * 300.75118 * 4 2 1 23 23 H 0.96703 * 113.99942 * 179.39591 * 6 5 4 24 24 H 0.97004 * 120.00145 * 2.66325 * 10 9 7 25 25 H 1.09005 * 109.49709 * 62.28674 * 15 5 4 26 26 H 1.08997 * 109.50506 * 182.40446 * 15 5 4 27 27 H 1.09005 * 109.46015 * 299.15783 * 16 15 5 28 28 H 1.08994 * 109.46149 * 179.19598 * 16 15 5 29 29 H 1.00904 * 110.99522 * 174.16312 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2498 5 6 3.5710 -0.7361 -1.2354 6 8 4.0622 0.6051 -1.2784 7 6 4.0784 -1.4969 -2.4331 8 1 4.6326 -2.4137 -2.2955 9 6 3.8352 -1.0228 -3.7048 10 7 3.2657 0.1509 -3.8711 11 14 4.3148 -2.0473 -5.1913 12 1 3.5966 -3.3465 -5.1494 13 1 5.7796 -2.2906 -5.1732 14 1 3.9497 -1.3192 -6.4330 15 6 4.0548 -1.4188 0.0470 16 6 3.4863 -0.6776 1.2593 17 7 2.0192 -0.6916 1.1995 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5135 0.8901 20 1 -0.3633 0.5142 -0.8898 21 1 1.6895 -0.1983 -2.1399 22 1 1.6659 -1.7447 -1.2575 23 1 5.0269 0.6714 -1.2626 24 1 3.0520 0.6999 -3.1005 25 1 3.7124 -2.4536 0.0598 26 1 5.1439 -1.3947 0.0835 27 1 3.8402 0.3534 1.2534 28 1 3.8173 -1.1697 2.1738 29 1 1.6194 -0.2924 2.0355 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575515159.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:50 Heat of formation + Delta-G solvation = -88.696364 kcal Electronic energy + Delta-G solvation = -12212.914565 eV Core-core repulsion = 10134.112052 eV Total energy + Delta-G solvation = -2078.802513 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.25941 -36.77861 -34.31204 -33.10680 -31.45691 -27.85024 -26.95318 -23.58327 -22.42463 -20.49812 -19.31481 -17.32635 -16.84812 -16.00488 -15.66517 -15.38879 -15.12016 -14.63028 -13.89224 -13.37154 -13.06955 -12.83749 -12.77083 -12.56375 -12.28142 -12.00825 -11.95997 -11.85706 -11.80952 -10.82647 -10.50126 -9.96512 -9.33102 -8.42523 -6.34229 1.52517 1.59144 1.78923 2.58676 3.19411 3.28147 3.83536 4.04928 4.19301 4.27775 4.35071 4.50285 4.58665 4.74752 4.85981 4.96576 5.00203 5.08186 5.15974 5.37624 5.40301 5.74758 5.98082 6.10730 6.24925 6.62120 6.72492 7.20470 7.60073 8.88981 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053263 B = 0.014569 C = 0.013156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.567276 B = 1921.387405 C = 2127.807827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.088 3.912 3 H 0.020 0.980 4 C -0.079 4.079 5 C 0.222 3.778 6 O -0.586 6.586 7 C -0.656 4.656 8 H 0.039 0.961 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 1.105 2.895 12 H -0.275 1.275 13 H -0.272 1.272 14 H -0.286 1.286 15 C -0.124 4.124 16 C 0.068 3.932 17 N -0.682 5.682 18 H 0.061 0.939 19 H 0.074 0.926 20 H 0.053 0.947 21 H 0.038 0.962 22 H 0.048 0.952 23 H 0.360 0.640 24 H 0.281 0.719 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.090 0.910 29 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -1.185 8.109 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.038 0.962 4 C -0.118 4.118 5 C 0.184 3.816 6 O -0.392 6.392 7 C -0.693 4.693 8 H 0.058 0.942 9 C -0.213 4.213 10 N -0.561 5.561 11 Si 0.928 3.072 12 H -0.201 1.201 13 H -0.198 1.198 14 H -0.211 1.211 15 C -0.162 4.162 16 C -0.061 4.061 17 N -0.315 5.315 18 H 0.080 0.920 19 H 0.093 0.907 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.206 0.794 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.300 -1.692 6.190 6.817 hybrid contribution 0.933 0.825 1.642 2.061 sum -1.368 -0.867 7.832 7.997 Atomic orbital electron populations 1.21760 0.93090 1.02437 1.02080 1.21400 0.95789 0.94306 0.90675 0.96165 1.21424 0.95727 0.98713 0.95941 1.19053 0.91159 0.79548 0.91875 1.86331 1.24924 1.30865 1.97068 1.22753 1.40993 1.11242 0.94351 0.94215 1.26985 0.93383 0.97460 1.03485 1.70729 1.38455 1.10593 1.36344 0.83114 0.76917 0.74332 0.72859 1.20090 1.19786 1.21109 1.22050 0.99233 0.99500 0.95456 1.21817 0.87750 0.98285 0.98221 1.60314 1.07399 1.59236 1.04590 0.92003 0.90658 0.92833 0.94330 0.93320 0.79406 0.90567 0.92803 0.92449 0.95791 0.89206 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.43 71.98 0.68 -3.62 15 2 C 0.09 3.43 2.90 44.94 0.13 3.56 15 3 H 0.02 0.87 7.76 -2.39 -0.02 0.85 15 4 C -0.08 -3.86 4.06 30.65 0.12 -3.74 15 5 C 0.22 11.12 0.54 -11.46 -0.01 11.11 15 6 O -0.59 -29.57 9.83 -148.98 -1.47 -31.03 15 7 C -0.66 -36.91 8.19 25.60 0.21 -36.70 15 8 H 0.04 2.24 7.75 -2.91 -0.02 2.21 15 9 C -0.01 -0.57 5.22 84.66 0.44 -0.13 15 10 N -0.92 -56.50 12.84 21.45 0.28 -56.22 15 11 Si 1.10 50.63 29.91 68.60 2.05 52.68 15 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 14 H -0.29 -13.12 7.11 99.48 0.71 -12.42 15 15 C -0.12 -5.22 5.02 30.65 0.15 -5.07 15 16 C 0.07 2.37 6.42 86.33 0.55 2.92 15 17 N -0.68 -23.12 6.50 -491.69 -3.20 -26.32 15 18 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 19 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 20 H 0.05 1.72 8.14 -2.39 -0.02 1.71 15 21 H 0.04 2.10 6.18 -2.39 -0.01 2.09 15 22 H 0.05 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.36 16.62 9.04 -74.06 -0.67 15.95 15 24 H 0.28 17.48 4.85 -92.71 -0.45 17.03 15 25 H 0.05 2.34 8.14 -2.38 -0.02 2.32 15 26 H 0.06 2.30 8.14 -2.39 -0.02 2.29 15 27 H 0.02 0.86 7.76 -2.38 -0.02 0.84 15 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 29 H 0.35 9.47 8.79 -89.69 -0.79 8.69 15 Total: -1.00 -64.42 231.33 -0.05 -64.47 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.00 Total: 28.09 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 2.29 Total: -31.66 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.92 Total: -82.54 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.47 Total: -31.03 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Total: -64.42 -0.05 -64.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575515159.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.231 kcal (2) G-P(sol) polarization free energy of solvation -64.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds