Wall clock time and date at job start Thu Apr 9 2020 13:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46350 * 2 1 4 4 C 1.53037 * 109.45250 * 119.97251 * 2 1 3 5 5 C 1.53118 * 109.27892 * 179.18844 * 4 2 1 6 6 O 1.42900 * 109.52454 * 182.44128 * 5 4 2 7 7 C 1.50704 * 109.57451 * 62.28144 * 5 4 2 8 8 H 1.08001 * 119.99720 * 0.28672 * 7 5 4 9 9 C 1.37873 * 120.00204 * 180.28344 * 7 5 4 10 10 N 1.31517 * 119.99980 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 120.00034 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46753 * 90.00255 * 11 9 7 13 13 H 1.48494 * 109.46934 * 210.00002 * 11 9 7 14 14 H 1.48501 * 109.47119 * 330.00419 * 11 9 7 15 15 C 1.53124 * 109.16008 * 302.34916 * 5 4 2 16 16 C 1.53036 * 109.27759 * 57.65133 * 15 5 4 17 17 N 1.46843 * 109.52504 * 300.82003 * 16 15 5 18 18 H 1.09002 * 109.47524 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47461 * 299.99681 * 1 2 3 20 20 H 1.09003 * 109.47595 * 60.00041 * 1 2 3 21 21 H 1.08996 * 109.50651 * 299.13109 * 4 2 1 22 22 H 1.09001 * 109.50257 * 59.24953 * 4 2 1 23 23 H 0.96701 * 113.99824 * 179.67917 * 6 5 4 24 24 H 0.96997 * 119.99988 * 179.97438 * 10 9 7 25 25 H 1.08994 * 109.50502 * 297.71059 * 15 5 4 26 26 H 1.08999 * 109.53239 * 177.61039 * 15 5 4 27 27 H 1.09001 * 109.46076 * 180.80414 * 16 15 5 28 28 H 1.09001 * 109.46079 * 60.83975 * 16 15 5 29 29 H 1.00898 * 110.99889 * 185.83859 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2500 5 6 3.5707 -0.7363 1.2358 6 8 4.0516 -1.4578 2.3718 7 6 4.0903 0.6776 1.2803 8 1 3.3986 1.5061 1.3199 9 6 5.4486 0.9135 1.2704 10 7 6.2910 -0.0954 1.2217 11 14 6.0927 2.6661 1.3262 12 1 6.2825 3.0788 2.7400 13 1 7.3918 2.7390 0.6106 14 1 5.1157 3.5735 0.6725 15 6 4.0545 -1.4192 -0.0465 16 6 3.4864 -0.6780 -1.2589 17 7 2.0192 -0.6918 -1.1993 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.6892 -0.1981 2.1400 22 1 1.6654 -1.7447 1.2577 23 1 5.0156 -1.5118 2.4240 24 1 7.2466 0.0706 1.2144 25 1 3.7121 -2.4539 -0.0593 26 1 5.1436 -1.3958 -0.0832 27 1 3.8174 -1.1703 -2.1733 28 1 3.8404 0.3529 -1.2529 29 1 1.6196 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575515164.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:51 Heat of formation + Delta-G solvation = -62.944255 kcal Electronic energy + Delta-G solvation = -12245.903006 eV Core-core repulsion = 10168.217188 eV Total energy + Delta-G solvation = -2077.685817 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.23244 -34.83736 -32.12222 -31.23959 -29.52770 -26.24701 -25.12945 -21.72589 -20.63045 -18.67427 -16.37929 -15.54456 -15.02912 -14.38867 -14.02940 -13.47853 -12.88660 -12.51401 -12.26170 -11.55295 -11.47614 -11.16407 -10.99887 -10.72088 -10.56466 -10.24270 -10.07684 -9.91993 -9.74470 -8.92793 -8.54007 -7.93724 -7.60184 -6.12964 -4.22959 3.22378 3.29717 3.32220 4.32551 4.96186 5.09959 5.58031 5.73731 6.00522 6.16157 6.21287 6.32515 6.48404 6.48931 6.69186 6.74433 6.83888 7.05969 7.20212 7.34554 7.43094 7.59509 7.84915 8.11220 8.19099 8.29216 8.78946 9.44429 9.62206 10.89717 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.043202 B = 0.016389 C = 0.015205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.958087 B = 1708.063078 C = 1841.032360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.092 3.908 3 H 0.045 0.955 4 C -0.087 4.087 5 C 0.246 3.754 6 O -0.595 6.595 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.068 3.932 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.275 1.275 15 C -0.133 4.133 16 C 0.074 3.926 17 N -0.689 5.689 18 H 0.057 0.943 19 H 0.054 0.946 20 H 0.045 0.955 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.379 0.621 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.094 0.906 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 0.745 -3.550 6.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 H 0.063 0.937 4 C -0.125 4.125 5 C 0.207 3.793 6 O -0.404 6.404 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.200 1.200 15 C -0.171 4.171 16 C -0.055 4.055 17 N -0.320 5.320 18 H 0.076 0.924 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.229 0.771 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.535 0.031 -3.137 6.362 hybrid contribution 1.253 1.999 -0.406 2.394 sum -4.282 2.030 -3.543 5.917 Atomic orbital electron populations 1.21848 0.95960 1.01674 1.00644 1.21348 0.92999 0.96357 0.91039 0.93702 1.21399 0.97024 0.98785 0.95279 1.18684 0.88604 0.89451 0.82589 1.86099 1.27737 1.77857 1.48732 1.21764 0.91791 0.92940 1.50035 0.92512 1.24989 0.96891 0.97278 0.94131 1.69591 1.02794 1.30226 1.51334 0.86559 0.78216 0.84751 0.78255 1.20511 1.21122 1.20045 1.22160 1.03052 0.96338 0.95548 1.21760 0.86053 0.99652 0.98018 1.60470 1.08693 1.58909 1.03901 0.92409 0.92664 0.93610 0.92828 0.93308 0.77108 0.92418 0.95100 0.88760 0.93343 0.94305 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.43 37.16 0.35 -1.91 15 2 C 0.09 1.82 2.83 -67.73 -0.19 1.63 15 3 H 0.05 0.96 6.79 -51.93 -0.35 0.61 15 4 C -0.09 -1.98 4.49 -26.65 -0.12 -2.10 15 5 C 0.25 6.32 0.85 -91.64 -0.08 6.24 15 6 O -0.60 -16.26 12.97 -35.23 -0.46 -16.71 15 7 C -0.53 -14.19 6.43 -34.44 -0.22 -14.41 15 8 H 0.06 1.54 6.88 -52.49 -0.36 1.18 15 9 C 0.07 1.81 5.22 -17.82 -0.09 1.71 15 10 N -0.90 -24.12 9.68 55.43 0.54 -23.59 15 11 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 15 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 15 C -0.13 -3.22 5.03 -26.65 -0.13 -3.36 15 16 C 0.07 1.58 6.34 -3.84 -0.02 1.56 15 17 N -0.69 -13.24 6.50 -106.77 -0.69 -13.94 15 18 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 19 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.05 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.38 10.38 7.17 45.56 0.33 10.70 15 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.09 2.47 6.02 -51.93 -0.31 2.16 15 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 15 28 H 0.04 0.90 7.31 -51.93 -0.38 0.52 15 29 H 0.32 5.31 8.79 -39.29 -0.35 4.97 15 LS Contribution 228.89 15.07 3.45 3.45 Total: -1.00 -27.69 228.89 -6.22 -33.91 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -3.52 Total: 11.69 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.51 Total: -10.64 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.16 Total: -37.52 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.46 Total: -16.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.69 -6.22 -33.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575515164.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.035 kcal (2) G-P(sol) polarization free energy of solvation -27.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds