Wall clock time and date at job start Thu Apr 9 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.36593 * 2 1 4 4 C 1.54379 * 110.32490 * 237.81995 * 2 1 3 5 5 N 1.48556 * 104.59343 * 264.95494 * 4 2 1 6 6 C 1.48561 * 104.22599 * 320.51850 * 5 4 2 7 7 C 1.54262 * 110.32485 * 122.18000 * 2 1 3 8 8 H 1.08996 * 110.32398 * 359.89973 * 7 2 1 9 9 C 1.53003 * 110.32503 * 237.79432 * 7 2 1 10 10 O 1.42900 * 109.46786 * 175.00290 * 9 7 2 11 11 C 1.34924 * 116.99778 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99986 * 359.97438 * 11 10 9 13 13 C 1.38633 * 120.00265 * 179.97438 * 11 10 9 14 14 N 1.31588 * 119.99667 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00461 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47485 * 179.97438 * 15 13 11 17 17 H 1.48505 * 109.46497 * 299.99635 * 15 13 11 18 18 H 1.48500 * 109.47264 * 59.99454 * 15 13 11 19 19 H 1.09004 * 109.47109 * 297.82153 * 1 2 3 20 20 H 1.09008 * 109.47144 * 57.81531 * 1 2 3 21 21 H 1.08991 * 109.47446 * 177.81697 * 1 2 3 22 22 H 1.09001 * 110.41019 * 23.73393 * 4 2 1 23 23 H 1.09003 * 110.41095 * 146.05722 * 4 2 1 24 24 H 1.00903 * 111.00413 * 200.95458 * 5 4 2 25 25 H 1.09004 * 110.40589 * 280.70680 * 6 5 4 26 26 H 1.08996 * 110.41279 * 158.26169 * 6 5 4 27 27 H 1.09002 * 109.47255 * 54.99765 * 9 7 2 28 28 H 1.08999 * 109.46752 * 294.99530 * 9 7 2 29 29 H 0.97001 * 119.99805 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0662 -0.7710 -1.2253 5 7 2.3147 -2.1466 -0.7225 6 6 2.8806 -1.9422 0.6358 7 6 2.0658 -0.7704 1.2244 8 1 1.2388 -1.1470 1.8263 9 6 2.9674 0.1331 2.0679 10 8 3.3592 -0.5595 3.2549 11 6 4.1624 0.1025 4.1134 12 1 4.4802 1.1098 3.8881 13 6 4.5799 -0.5104 5.2848 14 7 4.1923 -1.7375 5.5595 15 14 5.6914 0.4063 6.4738 16 1 5.9913 -0.4619 7.6405 17 1 6.9576 0.7692 5.7878 18 1 5.0087 1.6405 6.9382 19 1 -0.3633 0.4796 0.9089 20 1 -0.3634 0.5474 -0.8698 21 1 -0.3634 -1.0268 -0.0391 22 1 1.3213 -0.7858 -2.0209 23 1 2.9930 -0.3213 -1.5816 24 1 2.9674 -2.6363 -1.3162 25 1 3.9360 -1.6770 0.5719 26 1 2.7489 -2.8388 1.2414 27 1 2.4240 1.0386 2.3380 28 1 3.8545 0.3995 1.4933 29 1 3.6142 -2.2131 4.9426 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642836938.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:58 Heat of formation + Delta-G solvation = -50.230499 kcal Electronic energy + Delta-G solvation = -11511.560407 eV Core-core repulsion = 9434.425900 eV Total energy + Delta-G solvation = -2077.134508 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.79704 -36.06049 -32.10635 -31.60920 -29.67637 -25.93118 -24.29076 -23.23088 -20.79757 -19.41325 -17.80441 -16.24487 -15.38040 -14.43960 -14.20181 -13.86919 -13.48099 -13.20979 -13.03988 -12.76303 -11.74227 -11.60274 -11.13582 -10.80897 -10.68162 -10.52867 -10.32211 -10.08022 -9.93272 -9.49122 -9.14320 -8.41323 -7.93035 -6.26681 -3.57832 3.41257 3.46230 3.64074 4.41693 4.51680 4.83035 4.92458 5.09891 5.43906 5.51410 5.64012 5.67051 5.70550 5.91354 5.97906 6.01833 6.17623 6.25343 6.30792 6.39677 6.53925 6.64441 6.77010 6.97991 7.46230 7.71715 8.87188 9.47690 10.12422 11.21444 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.074335 B = 0.008947 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.585252 B = 3128.837233 C = 3253.982871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.073 0.927 4 C 0.039 3.961 5 N -0.669 5.669 6 C 0.049 3.951 7 C -0.083 4.083 8 H 0.083 0.917 9 C 0.090 3.910 10 O -0.318 6.318 11 C -0.449 4.449 12 H 0.050 0.950 13 C -0.008 4.008 14 N -0.914 5.914 15 Si 1.090 2.910 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.289 1.289 19 H 0.054 0.946 20 H 0.050 0.950 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.331 0.669 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.023 0.977 28 H 0.020 0.980 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 3.016 -11.241 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.090 4.090 5 N -0.297 5.297 6 C -0.080 4.080 7 C -0.102 4.102 8 H 0.101 0.899 9 C 0.012 3.988 10 O -0.234 6.234 11 C -0.528 4.528 12 H 0.068 0.932 13 C -0.208 4.208 14 N -0.553 5.553 15 Si 0.918 3.082 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.216 1.216 19 H 0.073 0.927 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.054 0.946 24 H 0.145 0.855 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.604 2.525 -9.564 10.528 hybrid contribution 0.241 0.872 -1.839 2.049 sum -3.363 3.397 -11.403 12.364 Atomic orbital electron populations 1.21781 0.94399 1.02118 1.01117 1.21867 0.96368 0.98835 0.94035 0.90852 1.22961 0.99304 0.89574 0.97181 1.63748 1.46629 1.15222 1.04112 1.22894 0.96533 0.99211 0.89394 1.21919 0.98354 0.95024 0.94951 0.89884 1.22112 0.95055 0.93509 0.88158 1.85322 1.67737 1.41046 1.29310 1.21674 1.28963 0.99191 1.03008 0.93169 1.26052 1.00688 0.97593 0.96446 1.70570 1.34656 1.10787 1.39277 0.83173 0.74970 0.74417 0.75671 1.20288 1.21619 1.21581 0.92660 0.93136 0.92008 0.90497 0.94557 0.85462 0.93910 0.89895 0.95849 0.96213 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.90 37.16 0.33 -1.47 15 2 C -0.09 -1.37 3.30 -89.24 -0.29 -1.67 15 3 H 0.07 1.07 7.71 -51.93 -0.40 0.67 15 4 C 0.04 0.53 7.01 -2.18 -0.02 0.51 15 5 N -0.67 -9.92 7.62 -109.66 -0.84 -10.75 15 6 C 0.05 0.88 6.91 -2.18 -0.02 0.86 15 7 C -0.08 -1.57 2.98 -89.23 -0.27 -1.84 15 8 H 0.08 1.66 7.71 -51.93 -0.40 1.26 15 9 C 0.09 2.05 5.12 37.16 0.19 2.24 15 10 O -0.32 -9.26 9.07 -16.49 -0.15 -9.41 15 11 C -0.45 -13.71 9.89 30.88 0.31 -13.41 15 12 H 0.05 1.47 7.77 -52.48 -0.41 1.06 15 13 C -0.01 -0.23 5.49 -17.51 -0.10 -0.33 15 14 N -0.91 -29.61 13.70 55.48 0.76 -28.85 15 15 Si 1.09 26.00 29.92 -169.99 -5.09 20.91 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 20 H 0.05 0.56 8.14 -51.92 -0.42 0.13 15 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.08 0.91 7.86 -51.93 -0.41 0.50 15 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 15 24 H 0.33 4.20 8.92 -39.29 -0.35 3.85 15 25 H 0.04 0.81 7.75 -51.93 -0.40 0.40 15 26 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 15 28 H 0.02 0.45 7.98 -51.93 -0.41 0.03 15 29 H 0.28 9.12 7.97 -40.82 -0.33 8.79 15 LS Contribution 243.77 15.07 3.67 3.67 Total: -1.00 -33.21 243.77 -5.94 -39.15 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.44 Total: 0.38 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 0.14 Total: -15.10 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.08 Total: -39.61 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.15 Total: -9.41 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.09 Total: 20.91 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.21 -5.94 -39.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642836938.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.078 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds