Wall clock time and date at job start Thu Apr 9 2020 13:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47034 * 2 1 4 4 C 1.36939 * 119.99962 * 264.65218 * 3 2 1 5 5 H 1.08000 * 120.00156 * 143.06422 * 4 3 2 6 6 C 1.38809 * 120.00090 * 323.07000 * 4 3 2 7 7 N 1.31627 * 119.99805 * 339.86307 * 6 4 3 8 8 Si 1.86795 * 120.00476 * 159.86430 * 6 4 3 9 9 H 1.48501 * 109.47236 * 59.99549 * 8 6 4 10 10 H 1.48500 * 109.47272 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47097 * 299.99665 * 8 6 4 12 12 C 1.46504 * 120.00174 * 84.64689 * 3 2 1 13 13 H 1.08994 * 112.85184 * 342.85301 * 12 3 2 14 14 C 1.53788 * 113.60931 * 114.05045 * 12 3 2 15 15 C 1.53776 * 87.08110 * 89.20083 * 14 12 3 16 16 C 1.53778 * 87.17734 * 25.38958 * 15 14 12 17 17 H 1.08995 * 113.61438 * 220.06290 * 16 15 14 18 18 O 1.42894 * 113.61680 * 89.15765 * 16 15 14 19 19 H 1.08997 * 109.46956 * 60.00838 * 1 2 3 20 20 H 1.09001 * 109.46442 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47361 * 300.00361 * 1 2 3 22 22 H 1.08993 * 109.47701 * 240.00001 * 2 1 3 23 23 H 1.09006 * 109.46896 * 119.99060 * 2 1 3 24 24 H 0.96999 * 119.99844 * 180.02562 * 7 6 4 25 25 H 1.09004 * 113.61116 * 334.64766 * 14 12 3 26 26 H 1.09001 * 113.68655 * 203.76283 * 14 12 3 27 27 H 1.08999 * 113.61214 * 139.98349 * 15 14 12 28 28 H 1.09006 * 113.61360 * 270.79296 * 15 14 12 29 29 H 0.96701 * 114.00199 * 79.50131 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3508 1.9899 -1.1808 5 1 2.1372 3.0385 -1.3266 6 6 2.9621 1.2592 -2.1903 7 7 3.5762 0.1302 -1.9061 8 14 2.9133 1.8779 -3.9521 9 1 3.5662 3.2096 -4.0274 10 1 3.6340 0.9233 -4.8322 11 1 1.5013 1.9931 -4.3974 12 6 2.1509 2.1113 1.2632 13 1 1.5920 1.6519 2.0783 14 6 3.6056 2.4512 1.6284 15 6 3.4173 3.7552 0.8354 16 6 1.9131 3.6264 1.1277 17 1 1.2794 3.8960 0.2828 18 8 1.5111 4.2539 2.3469 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 4.0038 -0.3802 -2.6114 25 1 4.3363 1.7733 1.1871 26 1 3.7641 2.6080 2.6954 27 1 3.8807 4.6227 1.3052 28 1 3.6661 3.6630 -0.2219 29 1 1.4056 5.2128 2.2796 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642861162.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:08 Heat of formation + Delta-G solvation = -27.525139 kcal Electronic energy + Delta-G solvation = -12032.178890 eV Core-core repulsion = 9956.028961 eV Total energy + Delta-G solvation = -2076.149929 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42623 -37.01404 -34.91821 -33.27534 -30.30535 -27.17985 -25.69629 -24.70617 -22.61553 -20.20721 -18.53353 -17.76313 -16.91387 -16.10650 -16.07320 -15.16048 -14.87663 -14.38523 -14.03276 -13.43674 -13.18260 -12.96237 -12.74979 -12.51007 -12.23519 -12.12469 -12.02948 -11.50820 -11.44337 -10.78249 -10.55900 -10.39682 -8.55000 -7.82270 -5.42371 1.47147 1.50070 1.55866 2.49469 3.08818 3.26976 3.87029 3.91280 4.13069 4.30355 4.35241 4.55131 4.84526 4.86630 4.91246 4.99382 5.07993 5.16329 5.31094 5.42276 5.52074 5.64560 5.72256 5.84386 6.48632 6.98776 7.17676 7.85811 8.39629 9.16552 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.037233 B = 0.016620 C = 0.013879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.839717 B = 1684.270886 C = 2016.880752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 N -0.578 5.578 4 C -0.257 4.257 5 H 0.066 0.934 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.295 1.295 11 H -0.279 1.279 12 C 0.156 3.844 13 H 0.061 0.939 14 C -0.154 4.154 15 C -0.150 4.150 16 C 0.079 3.921 17 H 0.057 0.943 18 O -0.561 6.561 19 H 0.037 0.963 20 H 0.060 0.940 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.021 0.979 24 H 0.251 0.749 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 5.387 3.941 7.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 N -0.298 5.298 4 C -0.387 4.387 5 H 0.083 0.917 6 C -0.234 4.234 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.221 1.221 11 H -0.205 1.205 12 C 0.047 3.953 13 H 0.079 0.921 14 C -0.194 4.194 15 C -0.188 4.188 16 C 0.018 3.982 17 H 0.075 0.925 18 O -0.369 6.369 19 H 0.056 0.944 20 H 0.079 0.921 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.039 0.961 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.238 4.647 4.050 6.963 hybrid contribution 0.296 0.541 -1.208 1.357 sum -2.941 5.188 2.841 6.606 Atomic orbital electron populations 1.22155 0.98072 1.00421 1.00300 1.20869 0.91837 0.85447 1.00265 1.43754 1.73653 1.11497 1.00941 1.19176 1.32345 0.95638 0.91535 0.91696 1.25853 0.96674 0.98376 1.02512 1.70128 1.36036 1.17731 1.32441 0.85537 0.77699 0.77665 0.80754 1.19930 1.22126 1.20500 1.21452 0.94288 0.90888 0.88662 0.92051 1.23350 0.99447 0.97901 0.98720 1.23352 0.97035 0.97398 1.00977 1.23075 0.94037 0.95372 0.85735 0.92544 1.86335 1.90678 1.26393 1.33455 0.94422 0.92102 0.93791 0.91335 0.96065 0.94000 0.94580 0.90121 0.90904 0.90278 0.75695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.00 10.23 71.98 0.74 -5.26 15 2 C 0.14 6.78 5.96 86.38 0.52 7.29 15 3 N -0.58 -28.75 2.66 -674.76 -1.79 -30.54 15 4 C -0.26 -13.51 7.13 84.03 0.60 -12.91 15 5 H 0.07 3.34 5.89 -2.91 -0.02 3.33 15 6 C -0.04 -2.01 4.94 84.86 0.42 -1.59 15 7 N -0.92 -53.02 11.42 21.65 0.25 -52.77 15 8 Si 0.96 43.60 29.60 68.60 2.03 45.63 15 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 10 H -0.30 -13.61 7.11 99.48 0.71 -12.90 15 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 12 C 0.16 6.83 4.48 45.58 0.20 7.04 15 13 H 0.06 2.64 8.10 -2.39 -0.02 2.62 15 14 C -0.15 -6.46 7.73 31.12 0.24 -6.22 15 15 C -0.15 -5.81 7.30 31.12 0.23 -5.58 15 16 C 0.08 2.99 4.51 31.18 0.14 3.13 15 17 H 0.06 2.25 7.09 -2.39 -0.02 2.23 15 18 O -0.56 -17.98 13.59 -148.98 -2.02 -20.01 15 19 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.07 3.72 5.49 -2.39 -0.01 3.70 15 23 H 0.02 0.98 8.11 -2.38 -0.02 0.97 15 24 H 0.25 14.07 8.31 -92.71 -0.77 13.30 15 25 H 0.04 1.73 8.14 -2.38 -0.02 1.71 15 26 H 0.08 3.02 8.14 -2.39 -0.02 3.00 15 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 28 H 0.08 3.50 6.07 -2.38 -0.01 3.48 15 29 H 0.39 8.36 9.12 -74.06 -0.68 7.69 15 Total: -1.00 -60.19 237.92 2.00 -58.19 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.46 Total: 13.62 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 3.08 Total: -14.11 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.55 Total: -83.32 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -2.02 Total: -20.01 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -60.19 2.00 -58.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642861162.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.664 kcal (2) G-P(sol) polarization free energy of solvation -60.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds