Wall clock time and date at job start Thu Apr 9 2020 13:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99521 * 2 1 4 4 H 1.48503 * 109.46842 * 239.99611 * 3 2 1 5 5 H 1.48497 * 109.47525 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47208 * 120.00085 * 3 2 1 7 7 C 1.37876 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99743 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46718 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.82117 * 51.66076 * 10 9 7 12 12 C 1.55238 * 110.89775 * 288.21236 * 10 9 7 13 13 C 1.54266 * 104.23333 * 203.79562 * 12 10 9 14 14 C 1.53869 * 106.59800 * 23.61579 * 13 12 10 15 15 F 1.39909 * 110.03030 * 240.71462 * 14 13 12 16 16 F 1.39898 * 110.03750 * 119.28560 * 14 13 12 17 17 C 1.54266 * 106.60031 * 359.97438 * 14 13 12 18 18 H 0.96994 * 120.00616 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.46915 * 60.00623 * 9 7 2 20 20 H 1.08998 * 109.47277 * 300.00060 * 9 7 2 21 21 H 1.09005 * 110.46917 * 85.10592 * 12 10 9 22 22 H 1.09007 * 110.58541 * 322.54512 * 12 10 9 23 23 H 1.08999 * 110.03060 * 264.32313 * 13 12 10 24 24 H 1.09006 * 110.06829 * 142.91691 * 13 12 10 25 25 H 1.09002 * 110.48629 * 95.07240 * 17 14 13 26 26 H 1.08998 * 110.48744 * 217.58143 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9775 -3.5450 0.8017 12 6 2.9498 -3.7895 -1.3748 13 6 3.4011 -5.2634 -1.4350 14 6 2.4827 -6.0437 -0.4783 15 9 3.2418 -6.6409 0.5340 16 9 1.7729 -7.0203 -1.1851 17 6 1.5058 -5.0167 0.1305 18 1 -0.4851 0.8399 -0.0004 19 1 0.6242 -2.5575 -0.8880 20 1 0.6247 -2.5563 0.8919 21 1 3.8118 -3.1242 -1.4251 22 1 2.2524 -3.5706 -2.1835 23 1 4.4381 -5.3499 -1.1108 24 1 3.2943 -5.6461 -2.4501 25 1 0.5733 -4.9963 -0.4335 26 1 1.3121 -5.2487 1.1778 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906396.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:17 Heat of formation + Delta-G solvation = -132.328977 kcal Electronic energy + Delta-G solvation = -11925.968779 eV Core-core repulsion = 9446.011985 eV Total energy + Delta-G solvation = -2479.956794 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 190.086 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.58303 -46.66236 -37.15339 -32.93577 -29.99780 -28.21417 -25.58712 -22.56185 -20.54312 -19.47065 -17.23196 -16.43168 -16.24378 -15.35543 -14.52396 -14.03913 -13.90833 -13.23683 -13.01638 -12.85830 -12.33570 -11.72175 -11.66293 -11.08444 -11.03841 -10.81677 -10.66203 -10.42455 -10.22072 -9.79611 -9.31371 -9.07487 -8.38423 -6.03310 -4.05895 3.31319 3.36284 3.38222 4.11381 4.37289 4.46380 4.68708 4.75147 5.32506 5.56890 5.63271 5.76874 5.79153 5.91401 6.09836 6.25480 6.45233 6.67961 6.83688 6.96343 7.60415 7.72943 7.94900 8.36832 9.00035 9.58357 11.07954 Molecular weight = 190.09amu Principal moments of inertia in cm(-1) A = 0.077051 B = 0.008891 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.310405 B = 3148.460398 C = 3264.125402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.080 4.080 11 H 0.072 0.928 12 C -0.106 4.106 13 C -0.164 4.164 14 C 0.275 3.725 15 F -0.206 7.206 16 F -0.209 7.209 17 C -0.158 4.158 18 H 0.261 0.739 19 H 0.020 0.980 20 H 0.019 0.981 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.713 -8.587 -1.852 9.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.099 4.099 11 H 0.090 0.910 12 C -0.144 4.144 13 C -0.202 4.202 14 C 0.239 3.761 15 F -0.187 7.187 16 F -0.190 7.190 17 C -0.196 4.196 18 H 0.071 0.929 19 H 0.039 0.961 20 H 0.037 0.963 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.559 -8.515 -1.847 9.834 hybrid contribution 0.439 0.690 0.045 0.819 sum 4.998 -7.825 -1.802 9.458 Atomic orbital electron populations 1.69944 1.06067 1.26795 1.50675 1.25015 0.94827 0.99251 0.95311 0.86663 0.79581 0.83169 0.78619 1.20245 1.21322 1.20246 1.21162 0.92992 0.90827 1.50773 0.92607 1.19089 0.93336 0.90628 0.97559 1.22294 0.98232 0.93253 0.96086 0.90993 1.22377 1.01087 0.91847 0.99065 1.23217 0.99540 0.98173 0.99262 1.22126 0.88130 0.83016 0.82798 1.92969 1.77440 1.86006 1.62293 1.92962 1.79872 1.66740 1.79389 1.23507 0.98666 0.95238 1.02226 0.92896 0.96132 0.96268 0.90584 0.90786 0.89564 0.89646 0.88803 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.63 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.52 -14.08 8.83 -34.44 -0.30 -14.38 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 15 9 C 0.03 0.76 4.48 -27.88 -0.12 0.63 15 10 C -0.08 -1.57 2.83 -88.45 -0.25 -1.82 15 11 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 12 C -0.11 -1.83 6.01 -24.88 -0.15 -1.98 15 13 C -0.16 -2.41 6.50 -25.62 -0.17 -2.58 15 14 C 0.28 4.47 2.57 -25.62 -0.07 4.41 15 15 F -0.21 -3.47 17.04 2.25 0.04 -3.43 15 16 F -0.21 -3.47 17.04 2.25 0.04 -3.43 15 17 C -0.16 -2.72 5.84 -25.08 -0.15 -2.87 15 18 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 19 H 0.02 0.53 8.00 -51.93 -0.42 0.12 15 20 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 21 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 22 H 0.07 1.30 7.95 -51.93 -0.41 0.89 15 23 H 0.09 1.16 8.02 -51.93 -0.42 0.74 15 24 H 0.08 1.12 8.02 -51.93 -0.42 0.71 15 25 H 0.09 1.60 8.02 -51.93 -0.42 1.18 15 26 H 0.08 1.37 8.11 -51.93 -0.42 0.95 15 LS Contribution 229.35 15.07 3.46 3.46 Total: -1.00 -28.56 229.35 -5.36 -33.93 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -3.31 Total: -3.98 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.31 Total: -17.08 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.74 Total: -25.63 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.08 Total: -6.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.56 -5.36 -33.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906396.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.403 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds