Wall clock time and date at job start Thu Apr 9 2020 13:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09010 * 110.43090 * 305.70178 * 10 9 7 12 12 C 1.54888 * 110.48855 * 68.23787 * 10 9 7 13 13 C 1.55024 * 102.68437 * 156.51825 * 12 10 9 14 14 C 1.54261 * 104.28098 * 322.23671 * 13 12 10 15 15 F 1.39898 * 110.03384 * 264.23237 * 14 13 12 16 16 F 1.39900 * 110.07506 * 142.82281 * 14 13 12 17 17 C 1.53880 * 106.60017 * 23.51564 * 14 13 12 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.09001 * 110.75714 * 274.93887 * 12 10 9 22 22 H 1.09003 * 110.75469 * 38.30888 * 12 10 9 23 23 H 1.08999 * 110.52762 * 203.48937 * 13 12 10 24 24 H 1.09008 * 110.36870 * 80.90170 * 13 12 10 25 25 H 1.08993 * 110.03098 * 240.71669 * 17 14 13 26 26 H 1.08998 * 110.06962 * 119.30442 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9455 -3.5604 -0.8395 12 6 3.0061 -3.7307 1.3368 13 6 3.4555 -5.2131 1.3989 14 6 2.2688 -5.9958 0.7999 15 9 1.4371 -6.4626 1.8234 16 9 2.7384 -7.0704 0.0370 17 6 1.4991 -5.0097 -0.0962 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 3.8681 -3.0636 1.3280 22 1 2.3419 -3.4944 2.1681 23 1 3.6305 -5.5165 2.4311 24 1 4.3531 -5.3629 0.7988 25 1 0.4777 -4.8948 0.2664 26 1 1.4916 -5.3675 -1.1257 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906399.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:19 Heat of formation + Delta-G solvation = -132.261938 kcal Electronic energy + Delta-G solvation = -11946.310511 eV Core-core repulsion = 9466.356624 eV Total energy + Delta-G solvation = -2479.953887 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 190.086 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.57243 -46.64837 -37.18190 -32.92166 -29.97531 -28.23918 -25.54612 -22.53428 -20.64351 -19.37146 -17.30701 -16.39166 -16.24948 -15.35959 -14.54693 -13.96757 -13.78963 -13.30672 -13.00966 -12.83017 -12.32427 -11.73015 -11.66962 -11.10914 -11.02253 -10.84344 -10.62781 -10.40400 -10.25368 -9.77650 -9.28990 -9.06509 -8.38567 -6.03327 -4.05832 3.29887 3.36665 3.39104 4.12821 4.37361 4.46658 4.69102 4.77059 5.32638 5.57799 5.63170 5.78239 5.79400 5.92805 6.09712 6.28660 6.44536 6.69008 6.84066 6.98575 7.60623 7.73437 7.95064 8.36818 9.00364 9.58450 11.08001 Molecular weight = 190.09amu Principal moments of inertia in cm(-1) A = 0.077166 B = 0.009001 C = 0.008661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.767414 B = 3110.154634 C = 3231.956756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.081 4.081 11 H 0.070 0.930 12 C -0.105 4.105 13 C -0.163 4.163 14 C 0.276 3.724 15 F -0.205 7.205 16 F -0.210 7.210 17 C -0.161 4.161 18 H 0.261 0.739 19 H 0.020 0.980 20 H 0.018 0.982 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -8.541 1.574 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.100 4.100 11 H 0.089 0.911 12 C -0.142 4.142 13 C -0.201 4.201 14 C 0.240 3.760 15 F -0.186 7.186 16 F -0.191 7.191 17 C -0.199 4.199 18 H 0.070 0.930 19 H 0.038 0.962 20 H 0.037 0.963 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.863 -8.470 1.584 9.894 hybrid contribution 0.335 0.707 -0.002 0.782 sum 5.198 -7.763 1.582 9.476 Atomic orbital electron populations 1.69962 1.06076 1.26660 1.50747 1.25024 0.94827 0.99272 0.95335 0.86603 0.79834 0.83524 0.78089 1.20701 1.21264 1.19869 1.21200 0.93020 0.90808 1.50644 0.92533 1.19155 0.93388 0.90738 0.97528 1.22079 0.98077 0.93208 0.96603 0.91132 1.22479 1.00794 0.91888 0.99044 1.23429 0.96490 0.98067 1.02111 1.22114 0.89746 0.82316 0.81827 1.92973 1.73957 1.90345 1.61298 1.92958 1.89414 1.60107 1.76599 1.23345 1.01135 0.95891 0.99514 0.92962 0.96155 0.96336 0.90300 0.90701 0.89878 0.89155 0.89002 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.29 55.43 0.74 -25.69 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 15 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.52 -14.03 8.71 -34.44 -0.30 -14.33 15 8 H 0.06 1.47 7.73 -52.49 -0.41 1.07 15 9 C 0.03 0.71 4.33 -27.88 -0.12 0.59 15 10 C -0.08 -1.58 2.81 -88.97 -0.25 -1.83 15 11 H 0.07 1.35 8.14 -51.92 -0.42 0.93 15 12 C -0.10 -1.82 5.94 -24.67 -0.15 -1.96 15 13 C -0.16 -2.40 6.40 -25.00 -0.16 -2.56 15 14 C 0.28 4.52 2.57 -25.61 -0.07 4.45 15 15 F -0.20 -3.55 17.04 2.25 0.04 -3.51 15 16 F -0.21 -3.46 17.04 2.25 0.04 -3.42 15 17 C -0.16 -2.77 6.07 -25.61 -0.16 -2.93 15 18 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 19 H 0.02 0.53 8.06 -51.93 -0.42 0.11 15 20 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 21 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 22 H 0.07 1.37 8.00 -51.93 -0.42 0.95 15 23 H 0.08 1.10 8.11 -51.93 -0.42 0.68 15 24 H 0.09 1.20 8.12 -51.92 -0.42 0.78 15 25 H 0.09 1.63 7.71 -51.93 -0.40 1.23 15 26 H 0.08 1.34 8.02 -51.93 -0.42 0.93 15 LS Contribution 229.02 15.07 3.45 3.45 Total: -1.00 -28.68 229.02 -5.36 -34.03 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -3.30 Total: -3.94 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.30 Total: -17.09 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.08 Total: -6.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.68 -5.36 -34.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906399.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.231 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds