Wall clock time and date at job start Thu Apr 9 2020 13:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47330 * 270.00256 * 3 2 1 5 5 H 1.48501 * 109.47178 * 30.00565 * 3 2 1 6 6 H 1.48503 * 109.46908 * 150.00398 * 3 2 1 7 7 C 1.37876 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00161 * 185.33091 * 7 2 1 9 9 C 1.50703 * 119.99943 * 5.32801 * 7 2 1 10 10 H 1.08994 * 109.72617 * 335.07300 * 9 7 2 11 11 C 1.53426 * 109.72728 * 95.71451 * 9 7 2 12 12 C 1.53011 * 109.81769 * 170.35437 * 11 9 7 13 13 C 1.53422 * 109.82218 * 288.06489 * 12 11 9 14 14 C 1.50790 * 108.12098 * 50.65483 * 13 12 11 15 15 C 1.33974 * 128.95018 * 163.34197 * 14 13 12 16 16 N 1.36657 * 108.05156 * 180.23776 * 15 14 13 17 17 H 0.97006 * 125.59932 * 179.97438 * 16 15 14 18 18 C 1.36656 * 108.80281 * 359.93392 * 16 15 14 19 19 C 1.33972 * 108.05308 * 359.94257 * 18 16 15 20 20 H 0.97006 * 119.99689 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.41251 * 290.45717 * 11 9 7 22 22 H 1.08996 * 109.41609 * 50.31905 * 11 9 7 23 23 H 1.08992 * 109.41572 * 48.17618 * 12 11 9 24 24 H 1.09001 * 109.40652 * 167.95890 * 12 11 9 25 25 H 1.08998 * 109.73492 * 170.31708 * 13 12 11 26 26 H 1.09004 * 109.73072 * 290.95215 * 13 12 11 27 27 H 1.07990 * 125.97218 * 0.26955 * 15 14 13 28 28 H 1.08005 * 125.97656 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0810 -1.1962 0.0864 9 6 1.2558 -2.4963 -0.1223 10 1 0.2343 -2.3682 0.2355 11 6 1.2384 -2.9485 -1.5883 12 6 0.6948 -4.3755 -1.6846 13 6 1.7308 -5.3651 -1.1356 14 6 2.1708 -4.8783 0.2220 15 6 2.8117 -5.5475 1.1897 16 7 2.9947 -4.6966 2.2433 17 1 3.4324 -4.9196 3.0797 18 6 2.4606 -3.4798 1.9246 19 6 1.9497 -3.5614 0.6888 20 1 -0.4850 0.8401 0.0004 21 1 0.6020 -2.2787 -2.1665 22 1 2.2519 -2.9203 -1.9883 23 1 -0.2239 -4.4532 -1.1033 24 1 0.4837 -4.6132 -2.7272 25 1 1.2825 -6.3544 -1.0444 26 1 2.5884 -5.4102 -1.8069 27 1 3.1288 -6.5788 1.1447 28 1 2.4522 -2.6050 2.5580 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260941664.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:25 Heat of formation + Delta-G solvation = 27.230488 kcal Electronic energy + Delta-G solvation = -11761.667144 eV Core-core repulsion = 9777.432986 eV Total energy + Delta-G solvation = -1984.234158 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.37023 -35.59182 -32.75637 -30.17872 -29.21911 -26.59854 -24.79655 -22.20201 -20.32494 -19.27684 -17.16575 -16.88811 -16.11882 -14.45161 -13.82895 -13.60859 -12.91650 -12.70868 -12.43617 -12.03194 -11.50483 -11.10913 -11.03416 -10.83639 -10.75288 -10.25559 -9.92015 -9.59134 -8.94014 -8.76144 -8.38281 -7.45576 -7.09134 -5.90230 -3.92131 3.13446 3.35909 3.42522 3.45694 4.03060 4.14665 4.53513 5.38357 5.70901 5.88443 5.92886 5.98542 6.20873 6.45793 6.60090 6.74744 6.81829 6.88693 7.04358 7.14576 7.34870 7.47791 7.73008 7.92225 8.05758 8.10206 8.23532 8.47810 8.64712 9.18525 9.70109 11.17759 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.043472 B = 0.013161 C = 0.010972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.932498 B = 2127.036313 C = 2551.381792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.498 4.498 8 H 0.052 0.948 9 C 0.095 3.905 10 H 0.064 0.936 11 C -0.099 4.099 12 C -0.116 4.116 13 C -0.039 4.039 14 C -0.176 4.176 15 C -0.035 4.035 16 N -0.581 5.581 17 H 0.402 0.598 18 C -0.019 4.019 19 C -0.115 4.115 20 H 0.259 0.741 21 H 0.049 0.951 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.147 0.853 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 -8.390 1.494 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.076 3.924 10 H 0.082 0.918 11 C -0.138 4.138 12 C -0.154 4.154 13 C -0.077 4.077 14 C -0.184 4.184 15 C -0.164 4.164 16 N -0.178 5.178 17 H 0.236 0.764 18 C -0.146 4.146 19 C -0.121 4.121 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.165 0.835 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.509 -8.276 1.622 9.134 hybrid contribution 0.748 0.841 0.408 1.197 sum 4.257 -7.435 2.030 8.805 Atomic orbital electron populations 1.69934 1.05866 1.26349 1.51302 1.24994 0.94795 0.98976 0.95163 0.86681 0.79881 0.83841 0.78085 1.20728 1.21420 1.20038 1.21105 0.93133 0.90224 1.49205 0.92933 1.17541 0.96751 0.89378 0.88717 0.91824 1.21665 0.98937 0.92593 1.00564 1.21617 0.98173 0.97126 0.98483 1.19928 0.97858 0.97194 0.92685 1.19555 1.06517 0.95648 0.96713 1.21026 1.09598 0.95934 0.89883 1.41978 1.49641 1.10956 1.15261 0.76363 1.21362 1.05749 0.88189 0.99312 1.20276 1.02552 0.94825 0.94479 0.93089 0.93211 0.93972 0.92731 0.93876 0.93059 0.92588 0.83513 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 12.78 55.43 0.71 -25.64 15 2 C 0.06 1.74 5.45 -17.82 -0.10 1.64 15 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.50 -13.96 8.00 -34.44 -0.28 -14.24 15 8 H 0.05 1.49 7.82 -52.49 -0.41 1.08 15 9 C 0.10 2.48 2.63 -92.66 -0.24 2.24 15 10 H 0.06 1.85 7.25 -51.93 -0.38 1.47 15 11 C -0.10 -2.34 5.16 -26.50 -0.14 -2.48 15 12 C -0.12 -2.29 5.86 -26.51 -0.16 -2.45 15 13 C -0.04 -0.70 6.29 -27.62 -0.17 -0.88 15 14 C -0.18 -3.59 5.92 -104.85 -0.62 -4.21 15 15 C -0.04 -0.61 11.91 -16.90 -0.20 -0.81 15 16 N -0.58 -9.82 6.09 -13.10 -0.08 -9.90 15 17 H 0.40 5.11 8.96 -40.82 -0.37 4.74 15 18 C -0.02 -0.40 11.48 -16.90 -0.19 -0.59 15 19 C -0.12 -2.69 5.43 -104.85 -0.57 -3.26 15 20 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 21 H 0.05 1.23 8.14 -51.93 -0.42 0.80 15 22 H 0.04 0.99 8.07 -51.93 -0.42 0.57 15 23 H 0.05 1.10 8.10 -51.93 -0.42 0.68 15 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.15 2.01 8.06 -52.49 -0.42 1.59 15 28 H 0.16 3.23 8.06 -52.48 -0.42 2.81 15 LS Contribution 235.06 15.07 3.54 3.54 Total: -1.00 -30.53 235.06 -7.18 -37.72 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.66 Total: 2.72 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.67 Total: -25.04 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.63 Total: -35.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.53 -7.18 -37.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260941664.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.946 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds