Wall clock time and date at job start Thu Apr 9 2020 13:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47330 * 270.00256 * 3 2 1 5 5 H 1.48501 * 109.47178 * 30.00565 * 3 2 1 6 6 H 1.48503 * 109.46908 * 150.00398 * 3 2 1 7 7 C 1.37876 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00161 * 185.33091 * 7 2 1 9 9 C 1.50703 * 119.99943 * 5.32801 * 7 2 1 10 10 H 1.08994 * 109.72617 * 335.07300 * 9 7 2 11 11 C 1.53426 * 109.72728 * 95.71451 * 9 7 2 12 12 C 1.53011 * 109.81769 * 170.35437 * 11 9 7 13 13 C 1.53422 * 109.82218 * 288.06489 * 12 11 9 14 14 C 1.50790 * 108.12098 * 50.65483 * 13 12 11 15 15 C 1.33974 * 128.95018 * 163.34197 * 14 13 12 16 16 N 1.36657 * 108.05156 * 180.23776 * 15 14 13 17 17 H 0.97006 * 125.59932 * 179.97438 * 16 15 14 18 18 C 1.36656 * 108.80281 * 359.93392 * 16 15 14 19 19 C 1.33972 * 108.05308 * 359.94257 * 18 16 15 20 20 H 0.97006 * 119.99689 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.41251 * 290.45717 * 11 9 7 22 22 H 1.08996 * 109.41609 * 50.31905 * 11 9 7 23 23 H 1.08992 * 109.41572 * 48.17618 * 12 11 9 24 24 H 1.09001 * 109.40652 * 167.95890 * 12 11 9 25 25 H 1.08998 * 109.73492 * 170.31708 * 13 12 11 26 26 H 1.09004 * 109.73072 * 290.95215 * 13 12 11 27 27 H 1.07990 * 125.97218 * 0.26955 * 15 14 13 28 28 H 1.08005 * 125.97656 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0810 -1.1962 0.0864 9 6 1.2558 -2.4963 -0.1223 10 1 0.2343 -2.3682 0.2355 11 6 1.2384 -2.9485 -1.5883 12 6 0.6948 -4.3755 -1.6846 13 6 1.7308 -5.3651 -1.1356 14 6 2.1708 -4.8783 0.2220 15 6 2.8117 -5.5475 1.1897 16 7 2.9947 -4.6966 2.2433 17 1 3.4324 -4.9196 3.0797 18 6 2.4606 -3.4798 1.9246 19 6 1.9497 -3.5614 0.6888 20 1 -0.4850 0.8401 0.0004 21 1 0.6020 -2.2787 -2.1665 22 1 2.2519 -2.9203 -1.9883 23 1 -0.2239 -4.4532 -1.1033 24 1 0.4837 -4.6132 -2.7272 25 1 1.2825 -6.3544 -1.0444 26 1 2.5884 -5.4102 -1.8069 27 1 3.1288 -6.5788 1.1447 28 1 2.4522 -2.6050 2.5580 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260941664.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:25 Heat of formation + Delta-G solvation = 8.686773 kcal Electronic energy + Delta-G solvation = -11762.471260 eV Core-core repulsion = 9777.432986 eV Total energy + Delta-G solvation = -1985.038273 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.89173 -37.31028 -34.74832 -32.00657 -30.79105 -28.27751 -26.70962 -23.98559 -22.02249 -20.85838 -18.76275 -18.47754 -18.21156 -16.45402 -15.43471 -15.22244 -14.44057 -14.36157 -14.24654 -13.77059 -13.28464 -12.87521 -12.69105 -12.63609 -12.60069 -12.04738 -11.85438 -11.36036 -10.94482 -10.67942 -10.48008 -8.98494 -8.70573 -8.05082 -6.15475 1.40467 1.41758 1.51944 1.67281 2.33643 2.50806 2.79363 3.21015 4.24046 4.36694 4.43118 4.58627 4.67780 4.96429 5.04100 5.07985 5.20761 5.31839 5.34066 5.43657 5.54010 5.69867 5.81013 5.97888 6.00904 6.40672 6.46325 6.65195 7.02469 7.15509 7.49778 9.01307 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.043472 B = 0.013161 C = 0.010972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.932498 B = 2127.036313 C = 2551.381792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.044 0.956 9 C 0.092 3.908 10 H 0.018 0.982 11 C -0.094 4.094 12 C -0.111 4.111 13 C -0.033 4.033 14 C -0.208 4.208 15 C -0.006 4.006 16 N -0.561 5.561 17 H 0.425 0.575 18 C -0.031 4.031 19 C -0.159 4.159 20 H 0.260 0.740 21 H 0.022 0.978 22 H 0.037 0.963 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.197 0.803 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -10.199 1.711 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.073 3.927 10 H 0.036 0.964 11 C -0.132 4.132 12 C -0.148 4.148 13 C -0.071 4.071 14 C -0.216 4.216 15 C -0.137 4.137 16 N -0.159 5.159 17 H 0.263 0.737 18 C -0.160 4.160 19 C -0.165 4.165 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.214 0.786 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.063 -10.103 1.863 11.454 hybrid contribution 0.281 1.355 0.385 1.436 sum 5.344 -8.749 2.248 10.495 Atomic orbital electron populations 1.70076 1.07374 1.27144 1.52507 1.25777 0.95608 1.02458 0.94991 0.85639 0.78726 0.79521 0.78267 1.20152 1.20862 1.19267 1.21359 0.92788 0.91740 1.48836 0.93793 1.17363 0.94422 0.90210 0.90685 0.96361 1.21505 0.98220 0.94975 0.98489 1.21540 0.98152 0.94953 1.00183 1.19944 0.97667 0.97784 0.91669 1.19864 1.08366 0.94619 0.98715 1.21682 1.06474 0.97325 0.88171 1.41905 1.48376 1.09375 1.16290 0.73656 1.21246 1.06306 0.89662 0.98766 1.20198 1.04625 0.95936 0.95781 0.93073 0.95913 0.94436 0.93983 0.91193 0.89835 0.91407 0.78601 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 12.78 21.45 0.27 -56.70 15 2 C 0.01 0.52 5.45 84.65 0.46 0.98 15 3 Si 0.95 45.29 29.54 68.60 2.03 47.32 15 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.51 -29.56 8.00 25.60 0.20 -29.35 15 8 H 0.04 2.56 7.82 -2.91 -0.02 2.54 15 9 C 0.09 5.02 2.63 -12.11 -0.03 4.99 15 10 H 0.02 1.14 7.25 -2.39 -0.02 1.12 15 11 C -0.09 -4.55 5.16 30.74 0.16 -4.39 15 12 C -0.11 -4.28 5.86 30.74 0.18 -4.10 15 13 C -0.03 -1.10 6.29 30.02 0.19 -0.91 15 14 C -0.21 -8.00 5.92 -20.01 -0.12 -8.12 15 15 C -0.01 -0.19 11.91 82.97 0.99 0.80 15 16 N -0.56 -17.28 6.09 -195.35 -1.19 -18.47 15 17 H 0.42 9.22 8.96 -92.70 -0.83 8.39 15 18 C -0.03 -1.28 11.48 82.97 0.95 -0.33 15 19 C -0.16 -7.45 5.43 -20.01 -0.11 -7.56 15 20 H 0.26 15.06 8.31 -92.70 -0.77 14.29 15 21 H 0.02 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.04 1.80 8.07 -2.39 -0.02 1.78 15 23 H 0.04 1.70 8.10 -2.39 -0.02 1.68 15 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 27 H 0.20 4.04 8.06 -2.92 -0.02 4.02 15 28 H 0.15 6.30 8.06 -2.91 -0.02 6.28 15 Total: -1.00 -68.42 235.06 4.30 -64.12 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.32 Total: 11.72 kcal Atomic # 6 Polarization: -50.87 SS G_CDS: 2.88 Total: -47.99 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -0.92 Total: -75.17 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.42 4.30 -64.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260941664.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.808 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds