Wall clock time and date at job start Thu Apr 9 2020 13:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99863 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99721 * 3 2 1 6 6 H 1.48498 * 109.47506 * 149.99959 * 3 2 1 7 7 C 1.40109 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99779 * 179.97438 * 7 2 1 9 9 C 1.41797 * 119.99987 * 0.28032 * 7 2 1 10 10 N 1.33855 * 120.16871 * 359.44219 * 9 7 2 11 11 C 1.31870 * 119.81658 * 179.76619 * 10 9 7 12 12 N 1.32455 * 120.17504 * 0.51575 * 11 10 9 13 13 C 1.32420 * 120.35231 * 359.73918 * 12 11 10 14 14 C 1.50694 * 119.91403 * 180.02562 * 13 12 11 15 15 C 1.53005 * 117.49831 * 8.72506 * 14 13 12 16 16 C 1.53004 * 117.49936 * 300.06438 * 14 13 12 17 17 N 1.31903 * 120.17257 * 359.97438 * 13 12 11 18 18 H 0.97005 * 120.00011 * 0.02562 * 1 2 3 19 19 H 1.08000 * 119.91058 * 180.25006 * 11 10 9 20 20 H 1.08997 * 115.55308 * 154.39170 * 14 13 12 21 21 H 1.08997 * 117.49911 * 359.97438 * 15 14 13 22 22 H 1.09000 * 117.50102 * 145.01900 * 15 14 13 23 23 H 1.08994 * 117.50145 * 214.97900 * 16 14 13 24 24 H 1.09000 * 117.49708 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4002 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4403 0.7000 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2133 0.0001 9 6 1.2981 -2.4414 -0.0049 10 7 -0.0405 -2.4454 0.0007 11 6 -0.6928 -3.5914 -0.0091 12 7 -0.0269 -4.7364 -0.0142 13 6 1.2973 -4.7405 -0.0146 14 6 2.0448 -6.0489 -0.0209 15 6 1.2304 -7.3268 -0.2325 16 6 1.8052 -7.0051 1.1493 17 7 1.9637 -3.6022 -0.0105 18 1 -0.4850 0.8401 -0.0004 19 1 -1.7727 -3.5964 -0.0087 20 1 3.0478 -6.0153 -0.4461 21 1 0.1538 -7.2211 -0.3667 22 1 1.6978 -8.1340 -0.7965 23 1 2.6506 -7.6007 1.4937 24 1 1.1073 -6.6875 1.9239 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132706.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:37 Heat of formation + Delta-G solvation = 77.077294 kcal Electronic energy + Delta-G solvation = -11149.707884 eV Core-core repulsion = 9064.094903 eV Total energy + Delta-G solvation = -2085.612981 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 191.075 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.64081 -36.53864 -34.00698 -31.94567 -31.21979 -26.99344 -24.26755 -22.66342 -21.88681 -20.46481 -17.75087 -16.66614 -15.80136 -14.95017 -14.27852 -13.62651 -13.41343 -12.83194 -12.23931 -11.71565 -11.42567 -11.24097 -11.07629 -10.81541 -10.47546 -10.40326 -9.97241 -9.80034 -9.00964 -8.58239 -7.87620 -7.64550 -6.65950 -4.97817 2.61792 2.65084 3.00307 3.04706 3.11216 3.80471 4.32534 4.67001 4.89215 5.29772 5.41066 5.50730 5.77801 5.97246 6.00406 6.08793 6.19637 6.55755 6.67375 6.78546 6.94624 7.48928 7.94803 8.33460 8.39799 8.73723 8.86735 10.04517 10.28620 Molecular weight = 191.08amu Principal moments of inertia in cm(-1) A = 0.078376 B = 0.009938 C = 0.009039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.164959 B = 2816.906453 C = 3096.894118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.066 3.934 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.388 4.388 8 H 0.096 0.904 9 C 0.402 3.598 10 N -0.545 5.545 11 C 0.315 3.685 12 N -0.660 5.660 13 C 0.375 3.625 14 C -0.085 4.085 15 C -0.159 4.159 16 C -0.162 4.162 17 N -0.621 5.621 18 H 0.278 0.722 19 H 0.167 0.833 20 H 0.116 0.884 21 H 0.108 0.892 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -4.008 0.339 4.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.163 4.163 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.427 4.427 8 H 0.114 0.886 9 C 0.163 3.837 10 N -0.270 5.270 11 C 0.016 3.984 12 N -0.392 5.392 13 C 0.096 3.904 14 C -0.105 4.105 15 C -0.196 4.196 16 C -0.201 4.201 17 N -0.348 5.348 18 H 0.090 0.910 19 H 0.184 0.816 20 H 0.134 0.866 21 H 0.126 0.874 22 H 0.108 0.892 23 H 0.111 0.889 24 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.234 -3.744 0.343 3.957 hybrid contribution 0.191 0.788 -0.012 0.811 sum 1.425 -2.955 0.331 3.298 Atomic orbital electron populations 1.70098 1.07435 1.28598 1.26473 1.26182 0.95092 1.01636 0.93365 0.86072 0.80361 0.79473 0.79501 1.19085 1.19838 1.18160 1.19445 0.94862 0.87307 1.41091 0.88569 1.20119 0.85975 0.90708 0.86925 1.69909 1.09714 1.27253 1.20098 1.24760 1.00062 0.84570 0.88989 1.68474 1.09274 1.32221 1.29220 1.21654 0.87428 0.92398 0.88896 1.20496 0.99034 0.86503 1.04447 1.22912 1.01209 0.96870 0.98650 1.22856 1.03012 1.02153 0.92058 1.68978 1.41635 0.98815 1.25381 0.91035 0.81600 0.86595 0.87382 0.89218 0.88899 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.32 11.49 55.55 0.64 -17.68 14 2 C 0.07 1.65 5.50 -17.36 -0.10 1.55 14 3 Si 0.92 18.17 29.56 -169.99 -5.02 13.15 14 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 14 7 C -0.39 -10.67 9.42 -37.52 -0.35 -11.02 14 8 H 0.10 2.52 7.85 -52.49 -0.41 2.11 14 9 C 0.40 11.66 7.40 -157.55 -1.17 10.49 14 10 N -0.55 -15.41 8.06 -14.00 -0.11 -15.52 14 11 C 0.32 7.94 12.40 -91.52 -1.13 6.81 14 12 N -0.66 -16.22 9.50 -12.13 -0.12 -16.33 14 13 C 0.38 9.30 7.36 -156.57 -1.15 8.14 14 14 C -0.08 -1.64 6.26 -91.77 -0.57 -2.22 14 15 C -0.16 -2.53 10.03 -26.69 -0.27 -2.80 14 16 C -0.16 -2.62 10.24 -26.69 -0.27 -2.89 14 17 N -0.62 -17.15 10.38 -10.16 -0.11 -17.25 14 18 H 0.28 6.45 8.29 -40.82 -0.34 6.11 14 19 H 0.17 3.54 8.06 -52.49 -0.42 3.12 14 20 H 0.12 2.11 8.14 -51.93 -0.42 1.69 14 21 H 0.11 1.86 7.58 -51.93 -0.39 1.47 14 22 H 0.09 1.17 8.14 -51.93 -0.42 0.74 14 23 H 0.09 1.23 8.14 -51.93 -0.42 0.81 14 24 H 0.09 1.60 8.14 -51.93 -0.42 1.18 14 LS Contribution 223.26 15.07 3.36 3.36 Total: -1.00 -30.70 223.26 -8.43 -39.13 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.05 Total: 3.07 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -5.02 Total: 8.08 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: 0.30 Total: -66.79 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.02 Total: 13.15 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.70 -8.43 -39.13 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132706.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.205 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds