Wall clock time and date at job start Thu Apr 9 2020 13:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.18334 * 300.70136 * 9 7 2 11 11 N 1.48118 * 110.20973 * 62.54411 * 9 7 2 12 12 C 1.48216 * 103.88575 * 146.36522 * 11 9 7 13 13 C 1.51004 * 105.75314 * 332.69738 * 12 11 9 14 14 N 1.32126 * 132.71009 * 197.28580 * 13 12 11 15 15 C 1.31878 * 120.62040 * 180.02562 * 14 13 12 16 16 N 1.31821 * 121.88815 * 0.04695 * 15 14 13 17 17 C 1.32468 * 120.82648 * 359.97091 * 16 15 14 18 18 C 1.38253 * 118.85890 * 0.02562 * 17 16 15 19 19 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 20 20 H 1.00897 * 110.99799 * 265.81562 * 11 9 7 21 21 H 1.09007 * 110.22710 * 213.59678 * 12 11 9 22 22 H 1.09002 * 110.19805 * 91.78565 * 12 11 9 23 23 H 1.07997 * 119.05897 * 180.02562 * 15 14 13 24 24 H 1.08008 * 120.57352 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6110 -2.5639 0.8793 11 7 0.4397 -2.6216 -1.2337 12 6 0.4606 -4.0736 -1.5304 13 6 1.7482 -4.5947 -0.9382 14 7 2.4388 -5.7045 -1.1311 15 6 3.5591 -5.9219 -0.4701 16 7 4.0330 -5.0540 0.4015 17 6 3.3939 -3.9198 0.6464 18 6 2.2159 -3.6586 -0.0286 19 1 -0.4849 -0.8401 0.0004 20 1 -0.5029 -2.2962 -1.0801 21 1 0.4480 -4.2383 -2.6079 22 1 -0.3939 -4.5651 -1.0651 23 1 4.1036 -6.8375 -0.6476 24 1 3.7857 -3.2117 1.3616 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261133133.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:38 Heat of formation + Delta-G solvation = 59.998045 kcal Electronic energy + Delta-G solvation = -11444.441089 eV Core-core repulsion = 9358.087496 eV Total energy + Delta-G solvation = -2086.353593 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 191.075 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.84313 -36.99488 -33.50141 -32.40292 -30.34574 -27.83663 -24.80029 -23.97666 -22.18093 -20.61101 -17.72572 -16.59006 -16.36636 -15.53004 -14.25688 -13.91303 -13.62958 -13.28408 -12.86625 -12.70722 -12.27676 -11.84240 -11.26372 -10.79805 -10.23621 -10.15824 -10.03647 -9.19028 -8.96214 -8.69244 -8.57423 -7.47852 -6.51310 -4.25218 1.43090 1.51692 3.38104 3.43277 3.58427 4.12205 4.21446 4.43870 4.58466 4.90941 5.20316 5.34602 5.40884 5.58072 5.72917 6.02913 6.10673 6.42459 6.55318 6.84120 7.41268 7.44277 7.93924 8.08560 8.26415 8.49991 8.68563 9.47929 10.86522 Molecular weight = 191.08amu Principal moments of inertia in cm(-1) A = 0.053312 B = 0.012606 C = 0.010679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.082461 B = 2220.717994 C = 2621.288280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.032 3.968 3 Si 1.076 2.924 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.579 4.579 8 H 0.056 0.944 9 C 0.223 3.777 10 H 0.024 0.976 11 N -0.643 5.643 12 C 0.085 3.915 13 C 0.143 3.857 14 N -0.514 5.514 15 C 0.266 3.734 16 N -0.522 5.522 17 C 0.154 3.846 18 C -0.150 4.150 19 H 0.264 0.736 20 H 0.340 0.660 21 H 0.090 0.910 22 H 0.055 0.945 23 H 0.191 0.809 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 -6.349 0.188 6.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.174 4.174 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.617 4.617 8 H 0.074 0.926 9 C 0.115 3.885 10 H 0.041 0.959 11 N -0.276 5.276 12 C -0.046 4.046 13 C -0.005 4.005 14 N -0.229 5.229 15 C -0.023 4.023 16 N -0.236 5.236 17 C -0.010 4.010 18 C -0.155 4.155 19 H 0.076 0.924 20 H 0.158 0.842 21 H 0.108 0.892 22 H 0.073 0.927 23 H 0.207 0.793 24 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.058 -5.326 -0.467 6.160 hybrid contribution -0.780 -1.436 0.732 1.790 sum 2.279 -6.762 0.265 7.141 Atomic orbital electron populations 1.70858 1.06888 1.30110 1.45564 1.25863 0.96418 1.02698 0.92389 0.83440 0.74760 0.74724 0.76742 1.21365 1.20847 1.21382 1.21755 0.93965 0.89786 1.56232 0.92619 1.18778 0.89536 0.92015 0.88137 0.95862 1.64405 1.17072 1.09336 1.36809 1.21389 0.90592 0.91642 1.00940 1.22245 0.96071 0.89014 0.93175 1.67484 1.07986 1.21584 1.25856 1.24691 0.90025 0.98174 0.89361 1.68449 1.33832 1.03675 1.17653 1.22562 0.89769 0.92554 0.96074 1.22630 0.97598 0.98671 0.96615 0.92372 0.84235 0.89220 0.92692 0.79255 0.81559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 13.55 55.43 0.75 -24.40 14 2 C 0.03 0.87 5.41 -17.82 -0.10 0.77 14 3 Si 1.08 24.21 29.90 -169.99 -5.08 19.12 14 4 H -0.29 -6.18 7.11 56.52 0.40 -5.78 14 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 14 6 H -0.29 -6.30 7.11 56.52 0.40 -5.90 14 7 C -0.58 -15.43 8.72 -34.44 -0.30 -15.73 14 8 H 0.06 1.49 7.61 -52.48 -0.40 1.09 14 9 C 0.22 5.35 2.68 -69.26 -0.19 5.16 14 10 H 0.02 0.60 8.00 -51.93 -0.42 0.18 14 11 N -0.64 -14.45 7.01 -108.31 -0.76 -15.20 14 12 C 0.08 1.61 7.46 -4.10 -0.03 1.58 14 13 C 0.14 2.94 7.50 -82.16 -0.62 2.32 14 14 N -0.51 -9.87 10.44 -10.71 -0.11 -9.99 14 15 C 0.27 4.61 12.28 -92.06 -1.13 3.48 14 16 N -0.52 -9.76 10.44 -14.61 -0.15 -9.92 14 17 C 0.15 3.09 11.03 -17.27 -0.19 2.90 14 18 C -0.15 -3.29 5.69 -104.39 -0.59 -3.88 14 19 H 0.26 7.15 5.53 -40.82 -0.23 6.92 14 20 H 0.34 7.35 7.22 -39.29 -0.28 7.07 14 21 H 0.09 1.60 8.14 -51.93 -0.42 1.17 14 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 14 23 H 0.19 2.45 8.06 -52.49 -0.42 2.03 14 24 H 0.17 3.05 8.06 -52.48 -0.42 2.62 14 LS Contribution 214.18 15.07 3.23 3.23 Total: -1.00 -29.55 214.18 -7.08 -36.63 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -1.81 Total: 3.92 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -3.14 Total: -3.40 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.27 Total: -59.51 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.08 Total: 19.12 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.55 -7.08 -36.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133133.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.632 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds