Wall clock time and date at job start Thu Apr 9 2020 13:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86809 * 119.99486 * 2 1 4 4 H 1.48495 * 109.46885 * 239.99630 * 3 2 1 5 5 H 1.48497 * 109.47373 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46957 * 119.99900 * 3 2 1 7 7 C 1.40087 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.41544 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.33669 * 119.75689 * 359.97193 * 9 7 2 11 11 N 1.28712 * 121.14671 * 179.97438 * 10 9 7 12 12 C 1.32500 * 120.64222 * 0.02668 * 11 10 9 13 13 C 1.39306 * 119.27724 * 359.97438 * 12 11 10 14 14 N 1.32056 * 118.99655 * 0.02562 * 13 12 11 15 15 C 1.51144 * 109.76112 * 180.02562 * 13 12 11 16 16 C 1.54381 * 105.18959 * 342.90164 * 15 13 12 17 17 C 1.51228 * 131.23430 * 180.02562 * 12 11 10 18 18 H 0.97002 * 120.00563 * 0.02562 * 1 2 3 19 19 H 1.09004 * 110.30166 * 223.96824 * 15 13 12 20 20 H 1.09002 * 110.38049 * 101.86916 * 15 13 12 21 21 H 1.08998 * 110.79329 * 268.05028 * 16 15 13 22 22 H 1.08991 * 110.96513 * 144.64925 * 16 15 13 23 23 H 1.09002 * 110.29648 * 78.13039 * 17 12 11 24 24 H 1.09002 * 110.29287 * 316.09490 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.0944 1.6965 -1.2124 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6966 1.2126 7 6 2.0073 -1.2131 0.0005 8 1 3.0873 -1.2131 0.0001 9 6 1.2996 -2.4390 0.0005 10 7 -0.0370 -2.4334 0.0006 11 7 -0.7074 -3.5322 0.0001 12 6 -0.0859 -4.7024 0.0001 13 6 1.3068 -4.7341 0.0000 14 7 1.9731 -3.5940 0.0005 15 6 1.7852 -6.1678 -0.0007 16 6 0.5625 -7.0025 0.4370 17 6 -0.6228 -6.1162 -0.0010 18 1 -0.4851 0.8400 -0.0004 19 1 2.6029 -6.2940 0.7090 20 1 2.1047 -6.4609 -1.0007 21 1 0.5589 -7.1464 1.5175 22 1 0.5402 -7.9620 -0.0795 23 1 -0.9529 -6.3945 -1.0018 24 1 -1.4462 -6.2084 0.7074 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254169.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:50 Heat of formation + Delta-G solvation = 54.307463 kcal Electronic energy + Delta-G solvation = -11305.577079 eV Core-core repulsion = 9218.976723 eV Total energy + Delta-G solvation = -2086.600355 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 191.075 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.92263 -36.10969 -33.84217 -32.81685 -29.46016 -27.84842 -25.84243 -23.46549 -21.55977 -20.16859 -17.82139 -16.88736 -15.33001 -15.17691 -13.95363 -13.64456 -13.25841 -12.83115 -12.45551 -11.94023 -11.39524 -11.30173 -11.07832 -10.75617 -10.68655 -10.46570 -10.16544 -9.85720 -9.44736 -9.40466 -8.09859 -7.29015 -6.75132 -4.89832 2.38252 2.54127 3.00351 3.03727 3.07533 3.80246 4.51254 4.84873 5.04095 5.37240 5.55797 5.57595 5.66424 5.96748 6.06933 6.22319 6.30998 6.37257 6.56498 6.63849 6.90458 7.10971 7.37318 7.97950 8.31703 8.39264 8.97502 10.05966 10.63444 Molecular weight = 191.08amu Principal moments of inertia in cm(-1) A = 0.088030 B = 0.010504 C = 0.009489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.995340 B = 2665.117963 C = 2950.096700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.060 3.940 3 Si 0.927 3.073 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.386 4.386 8 H 0.096 0.904 9 C 0.319 3.681 10 N -0.282 5.282 11 N -0.184 5.184 12 C -0.156 4.156 13 C 0.142 3.858 14 N -0.536 5.536 15 C -0.064 4.064 16 C -0.116 4.116 17 C -0.036 4.036 18 H 0.283 0.717 19 H 0.077 0.923 20 H 0.082 0.918 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -5.757 0.151 6.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.168 4.168 3 Si 0.750 3.250 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.422 4.422 8 H 0.115 0.885 9 C 0.082 3.918 10 N -0.142 5.142 11 N -0.038 5.038 12 C -0.305 4.305 13 C -0.020 4.020 14 N -0.260 5.260 15 C -0.103 4.103 16 C -0.155 4.155 17 C -0.076 4.076 18 H 0.095 0.905 19 H 0.095 0.905 20 H 0.101 0.899 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.147 -4.581 0.150 4.725 hybrid contribution 0.814 -0.005 -0.023 0.814 sum 1.961 -4.586 0.127 4.989 Atomic orbital electron populations 1.70042 1.07356 1.29230 1.26189 1.26181 0.95154 1.01702 0.93726 0.86064 0.79804 0.78975 0.80202 1.18591 1.19840 1.18581 1.19302 0.94912 0.87229 1.40806 0.88548 1.21278 0.88890 0.90930 0.90748 1.74971 1.06418 1.13002 1.19828 1.73000 1.33619 0.95011 1.02164 1.23133 0.94598 0.96412 1.16393 1.22473 0.92789 0.94812 0.91968 1.68514 1.40665 0.97643 1.19134 1.20792 0.98204 0.89119 1.02140 1.22263 0.94430 0.97648 1.01115 1.20350 0.97177 0.89157 1.00938 0.90536 0.90481 0.89941 0.91255 0.90618 0.91496 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.06 11.46 55.55 0.64 -18.42 14 2 C 0.06 1.54 5.50 -17.35 -0.10 1.44 14 3 Si 0.93 18.42 29.56 -169.99 -5.02 13.39 14 4 H -0.26 -5.10 7.11 56.52 0.40 -4.69 14 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 7 C -0.39 -10.70 9.39 -37.63 -0.35 -11.06 14 8 H 0.10 2.51 7.85 -52.49 -0.41 2.10 14 9 C 0.32 9.42 7.43 -157.92 -1.17 8.25 14 10 N -0.28 -8.55 9.09 30.84 0.28 -8.26 14 11 N -0.18 -5.16 11.63 33.95 0.39 -4.76 14 12 C -0.16 -3.76 7.45 -81.65 -0.61 -4.37 14 13 C 0.14 3.40 7.37 -81.88 -0.60 2.79 14 14 N -0.54 -14.71 10.47 -8.57 -0.09 -14.80 14 15 C -0.06 -1.09 6.76 -26.94 -0.18 -1.27 14 16 C -0.12 -1.65 7.07 -25.30 -0.18 -1.83 14 17 C -0.04 -0.64 6.76 -26.92 -0.18 -0.82 14 18 H 0.28 6.80 8.29 -40.82 -0.34 6.46 14 19 H 0.08 1.21 8.14 -51.93 -0.42 0.79 14 20 H 0.08 1.26 8.14 -51.93 -0.42 0.84 14 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 14 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 14 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 14 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 14 LS Contribution 216.25 15.07 3.26 3.26 Total: -1.00 -32.24 216.25 -6.00 -38.24 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.08 Total: -1.78 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -3.38 Total: -6.87 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 1.22 Total: -46.25 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -32.24 -6.00 -38.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254169.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.552 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds