Wall clock time and date at job start Thu Apr 9 2020 13:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86809 * 119.99486 * 2 1 4 4 H 1.48495 * 109.46885 * 239.99630 * 3 2 1 5 5 H 1.48497 * 109.47373 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46957 * 119.99900 * 3 2 1 7 7 C 1.40087 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.41544 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.33669 * 119.75689 * 359.97193 * 9 7 2 11 11 N 1.28712 * 121.14671 * 179.97438 * 10 9 7 12 12 C 1.32500 * 120.64222 * 0.02668 * 11 10 9 13 13 C 1.39306 * 119.27724 * 359.97438 * 12 11 10 14 14 N 1.32056 * 118.99655 * 0.02562 * 13 12 11 15 15 C 1.51144 * 109.76112 * 180.02562 * 13 12 11 16 16 C 1.54381 * 105.18959 * 342.90164 * 15 13 12 17 17 C 1.51228 * 131.23430 * 180.02562 * 12 11 10 18 18 H 0.97002 * 120.00563 * 0.02562 * 1 2 3 19 19 H 1.09004 * 110.30166 * 223.96824 * 15 13 12 20 20 H 1.09002 * 110.38049 * 101.86916 * 15 13 12 21 21 H 1.08998 * 110.79329 * 268.05028 * 16 15 13 22 22 H 1.08991 * 110.96513 * 144.64925 * 16 15 13 23 23 H 1.09002 * 110.29648 * 78.13039 * 17 12 11 24 24 H 1.09002 * 110.29287 * 316.09490 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.0944 1.6965 -1.2124 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6966 1.2126 7 6 2.0073 -1.2131 0.0005 8 1 3.0873 -1.2131 0.0001 9 6 1.2996 -2.4390 0.0005 10 7 -0.0370 -2.4334 0.0006 11 7 -0.7074 -3.5322 0.0001 12 6 -0.0859 -4.7024 0.0001 13 6 1.3068 -4.7341 0.0000 14 7 1.9731 -3.5940 0.0005 15 6 1.7852 -6.1678 -0.0007 16 6 0.5625 -7.0025 0.4370 17 6 -0.6228 -6.1162 -0.0010 18 1 -0.4851 0.8400 -0.0004 19 1 2.6029 -6.2940 0.7090 20 1 2.1047 -6.4609 -1.0007 21 1 0.5589 -7.1464 1.5175 22 1 0.5402 -7.9620 -0.0795 23 1 -0.9529 -6.3945 -1.0018 24 1 -1.4462 -6.2084 0.7074 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254169.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:50 Heat of formation + Delta-G solvation = 31.309198 kcal Electronic energy + Delta-G solvation = -11306.574358 eV Core-core repulsion = 9218.976723 eV Total energy + Delta-G solvation = -2087.597635 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 191.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.83989 -37.73766 -35.78252 -34.78250 -31.31644 -29.50727 -27.64017 -25.28081 -23.48774 -21.60778 -19.77348 -18.81388 -17.09884 -16.76397 -15.66452 -15.43790 -14.99787 -14.45876 -13.83293 -13.50196 -13.09952 -13.04394 -12.85343 -12.28830 -12.05397 -12.00975 -11.94164 -11.81530 -11.36898 -11.18490 -10.00961 -9.31369 -8.65538 -6.97287 0.45109 0.56101 1.36282 1.50336 1.53695 2.14224 2.60062 3.22782 3.47715 3.55933 4.04787 4.07551 4.23472 4.25051 4.76449 4.88216 4.91127 4.98135 5.04451 5.22012 5.27905 5.39683 5.53695 5.92412 6.29878 6.42596 6.95889 8.20162 8.59610 Molecular weight = 191.08amu Principal moments of inertia in cm(-1) A = 0.088030 B = 0.010504 C = 0.009489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.995340 B = 2665.117963 C = 2950.096700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.015 3.985 3 Si 1.013 2.987 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.253 1.253 7 C -0.419 4.419 8 H 0.101 0.899 9 C 0.285 3.715 10 N -0.333 5.333 11 N -0.226 5.226 12 C -0.156 4.156 13 C 0.130 3.870 14 N -0.561 5.561 15 C -0.061 4.061 16 C -0.098 4.098 17 C -0.038 4.038 18 H 0.292 0.708 19 H 0.094 0.906 20 H 0.107 0.893 21 H 0.081 0.919 22 H 0.125 0.875 23 H 0.087 0.913 24 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -7.342 0.136 7.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.209 4.209 3 Si 0.830 3.170 4 H -0.177 1.177 5 H -0.183 1.183 6 H -0.177 1.177 7 C -0.456 4.456 8 H 0.119 0.881 9 C 0.047 3.953 10 N -0.191 5.191 11 N -0.077 5.077 12 C -0.309 4.309 13 C -0.034 4.034 14 N -0.285 5.285 15 C -0.099 4.099 16 C -0.136 4.136 17 C -0.078 4.078 18 H 0.103 0.897 19 H 0.112 0.888 20 H 0.125 0.875 21 H 0.099 0.901 22 H 0.143 0.857 23 H 0.106 0.894 24 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.977 -6.170 0.137 6.481 hybrid contribution 0.508 0.254 -0.027 0.569 sum 2.486 -5.917 0.110 6.419 Atomic orbital electron populations 1.70143 1.09400 1.30882 1.26706 1.27330 0.95975 1.05331 0.92214 0.84816 0.78317 0.73270 0.80588 1.17689 1.18350 1.17685 1.19736 0.95350 0.88174 1.42302 0.88108 1.21773 0.89335 0.92420 0.91749 1.74890 1.06864 1.14412 1.22913 1.72835 1.34620 0.96310 1.03925 1.24345 0.95720 0.97964 1.12920 1.23814 0.93396 0.96809 0.89364 1.68584 1.41196 0.98495 1.20193 1.21097 1.00108 0.84501 1.04233 1.22339 0.90477 0.98241 1.02518 1.20653 0.99062 0.85311 1.02740 0.89673 0.88791 0.87472 0.90052 0.85707 0.89444 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.05 11.46 21.84 0.25 -41.80 14 2 C 0.02 0.79 5.50 85.31 0.47 1.26 14 3 Si 1.01 38.06 29.56 68.60 2.03 40.09 14 4 H -0.25 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.26 -9.05 7.11 99.48 0.71 -8.34 14 6 H -0.25 -9.08 7.11 99.48 0.71 -8.37 14 7 C -0.42 -24.21 9.39 23.53 0.22 -23.98 14 8 H 0.10 5.45 7.85 -2.91 -0.02 5.43 14 9 C 0.29 17.62 7.43 135.00 1.00 18.62 14 10 N -0.33 -21.18 9.09 -56.33 -0.51 -21.69 14 11 N -0.23 -13.15 11.63 -46.51 -0.54 -13.69 14 12 C -0.16 -7.50 7.45 42.88 0.32 -7.18 14 13 C 0.13 6.10 7.37 42.92 0.32 6.42 14 14 N -0.56 -31.49 10.47 -181.02 -1.90 -33.39 14 15 C -0.06 -1.85 6.76 30.46 0.21 -1.64 14 16 C -0.10 -2.26 7.07 31.52 0.22 -2.03 14 17 C -0.04 -1.21 6.76 30.47 0.21 -1.01 14 18 H 0.29 14.50 8.29 -92.71 -0.77 13.73 14 19 H 0.09 2.59 8.14 -2.39 -0.02 2.57 14 20 H 0.11 2.79 8.14 -2.39 -0.02 2.77 14 21 H 0.08 1.73 8.14 -2.39 -0.02 1.72 14 22 H 0.12 1.81 8.14 -2.39 -0.02 1.79 14 23 H 0.09 2.48 8.14 -2.39 -0.02 2.46 14 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 14 Total: -1.00 -75.83 216.25 3.51 -72.32 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.21 Total: 7.71 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 2.96 Total: -9.55 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -2.70 Total: -110.57 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -75.83 3.51 -72.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254169.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.633 kcal (2) G-P(sol) polarization free energy of solvation -75.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds