Wall clock time and date at job start Thu Apr 9 2020 13:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99817 * 2 1 4 4 H 1.48501 * 109.47025 * 240.00339 * 3 2 1 5 5 H 1.48510 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47091 * 119.99940 * 3 2 1 7 7 C 1.37871 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99847 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.46774 * 299.99628 * 9 7 2 11 11 F 1.39898 * 109.47069 * 59.99856 * 9 7 2 12 12 C 1.53002 * 109.47073 * 179.97438 * 9 7 2 13 13 H 1.09005 * 109.46211 * 58.79326 * 12 9 7 14 14 C 1.54015 * 109.72796 * 179.07580 * 12 9 7 15 15 C 1.55132 * 106.98467 * 167.04453 * 14 12 9 16 16 S 1.83458 * 102.20607 * 317.93741 * 15 14 12 17 17 C 1.54276 * 109.61006 * 298.54853 * 12 9 7 18 18 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.88589 * 47.68361 * 14 12 9 20 20 H 1.08995 * 110.00846 * 286.47459 * 14 12 9 21 21 H 1.09004 * 110.85654 * 199.75602 * 15 14 12 22 22 H 1.09004 * 111.03570 * 76.19261 * 15 14 12 23 23 H 1.09002 * 110.40402 * 93.33204 * 17 12 9 24 24 H 1.08998 * 110.39950 * 331.03100 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 9 0.4472 -2.5735 -1.1420 12 6 2.2453 -3.6620 0.0005 13 1 2.8861 -3.5920 0.8796 14 6 1.4814 -4.9992 0.0239 15 6 2.5080 -6.1134 -0.3097 16 16 3.4759 -5.3543 -1.6707 17 6 3.1097 -3.6042 -1.2760 18 1 -0.4850 0.8400 -0.0004 19 1 0.6891 -4.9867 -0.7245 20 1 1.0563 -5.1686 1.0132 21 1 2.0027 -7.0173 -0.6500 22 1 3.1460 -6.3271 0.5479 23 1 4.0327 -3.0565 -1.0856 24 1 2.5540 -3.1394 -2.0904 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259174.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:54 Heat of formation + Delta-G solvation = -72.899225 kcal Electronic energy + Delta-G solvation = -10215.081764 eV Core-core repulsion = 8168.082119 eV Total energy + Delta-G solvation = -2046.999645 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 190.052 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.69406 -35.86395 -32.75526 -29.81323 -26.85994 -24.68298 -22.04303 -19.23750 -16.84754 -15.94110 -15.59453 -14.70474 -14.17111 -13.57922 -13.31148 -12.96641 -12.20922 -11.96128 -11.51869 -11.34311 -11.03673 -10.99131 -10.65537 -10.43987 -10.27636 -9.76898 -9.06686 -8.82251 -8.59884 -7.29807 -6.19021 -4.35788 2.30461 2.86067 3.24370 3.29216 3.31253 4.29109 5.05859 5.15333 5.17558 5.41628 5.58255 5.74794 5.86002 6.13587 6.19759 6.28390 6.53375 6.69352 6.94420 7.60733 7.75653 7.94419 8.68494 9.39168 10.88182 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.066237 B = 0.011686 C = 0.010710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.624736 B = 2395.365420 C = 2613.833620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.076 3.924 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.567 4.567 8 H 0.066 0.934 9 C 0.229 3.771 10 H 0.039 0.961 11 F -0.232 7.232 12 C -0.115 4.115 13 H 0.082 0.918 14 C -0.127 4.127 15 C -0.063 4.063 16 S -0.341 6.341 17 C -0.035 4.035 18 H 0.266 0.734 19 H 0.081 0.919 20 H 0.078 0.922 21 H 0.094 0.906 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -7.067 0.957 7.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.605 4.605 8 H 0.084 0.916 9 C 0.191 3.809 10 H 0.057 0.943 11 F -0.213 7.213 12 C -0.136 4.136 13 H 0.101 0.899 14 C -0.166 4.166 15 C -0.211 4.211 16 S -0.115 6.115 17 C -0.183 4.183 18 H 0.076 0.924 19 H 0.100 0.900 20 H 0.097 0.903 21 H 0.112 0.888 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.009 -7.453 0.052 8.463 hybrid contribution -0.244 1.437 0.852 1.688 sum 3.765 -6.016 0.904 7.155 Atomic orbital electron populations 1.69986 1.06175 1.27435 1.47244 1.25063 0.94841 0.99711 0.93354 0.86547 0.79613 0.82332 0.78896 1.19864 1.21041 1.19927 1.21411 0.93570 0.90283 1.55213 0.91554 1.18926 0.86759 0.91945 0.83232 0.94295 1.92693 1.76320 1.97248 1.55067 1.22662 0.97984 0.95810 0.97129 0.89920 1.22681 0.98346 0.92543 1.03011 1.24144 0.98794 1.00441 0.97728 1.87233 1.69667 1.09938 1.44662 1.23959 1.02685 0.90339 1.01276 0.92395 0.90023 0.90299 0.88794 0.89755 0.89144 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.34 12.95 55.43 0.72 -24.62 14 2 C 0.08 2.09 5.42 -17.82 -0.10 2.00 14 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 14 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 14 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 14 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 14 7 C -0.57 -15.16 8.30 -34.44 -0.29 -15.44 14 8 H 0.07 1.70 7.41 -52.48 -0.39 1.31 14 9 C 0.23 5.65 2.84 -27.88 -0.08 5.57 14 10 H 0.04 1.01 8.14 -51.93 -0.42 0.59 14 11 F -0.23 -6.27 15.19 2.25 0.03 -6.23 14 12 C -0.12 -2.28 2.46 -89.42 -0.22 -2.50 14 13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 14 14 C -0.13 -2.13 5.77 -25.07 -0.14 -2.28 14 15 C -0.06 -0.93 7.38 38.29 0.28 -0.64 14 16 S -0.34 -6.01 23.26 -107.50 -2.50 -8.51 14 17 C -0.04 -0.69 5.94 37.83 0.22 -0.46 14 18 H 0.27 7.30 8.31 -40.82 -0.34 6.96 14 19 H 0.08 1.48 7.59 -51.93 -0.39 1.08 14 20 H 0.08 1.18 8.14 -51.93 -0.42 0.76 14 21 H 0.09 1.21 8.14 -51.93 -0.42 0.78 14 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 14 23 H 0.09 1.71 8.04 -51.93 -0.42 1.30 14 24 H 0.10 2.18 7.27 -51.93 -0.38 1.81 14 LS Contribution 219.71 15.07 3.31 3.31 Total: -1.00 -28.79 219.71 -6.60 -35.40 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -2.83 Total: -1.42 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.32 Total: -13.76 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.72 Total: -24.62 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.03 Total: -6.23 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -2.50 Total: -8.51 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.79 -6.60 -35.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259174.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.503 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds