Wall clock time and date at job start Thu Apr 9 2020 13:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99817 * 2 1 4 4 H 1.48501 * 109.47025 * 240.00339 * 3 2 1 5 5 H 1.48510 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47091 * 119.99940 * 3 2 1 7 7 C 1.37871 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99847 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.46774 * 299.99628 * 9 7 2 11 11 F 1.39898 * 109.47069 * 59.99856 * 9 7 2 12 12 C 1.53002 * 109.47073 * 179.97438 * 9 7 2 13 13 H 1.09005 * 109.46211 * 58.79326 * 12 9 7 14 14 C 1.54015 * 109.72796 * 179.07580 * 12 9 7 15 15 C 1.55132 * 106.98467 * 167.04453 * 14 12 9 16 16 S 1.83458 * 102.20607 * 317.93741 * 15 14 12 17 17 C 1.54276 * 109.61006 * 298.54853 * 12 9 7 18 18 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.88589 * 47.68361 * 14 12 9 20 20 H 1.08995 * 110.00846 * 286.47459 * 14 12 9 21 21 H 1.09004 * 110.85654 * 199.75602 * 15 14 12 22 22 H 1.09004 * 111.03570 * 76.19261 * 15 14 12 23 23 H 1.09002 * 110.40402 * 93.33204 * 17 12 9 24 24 H 1.08998 * 110.39950 * 331.03100 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 9 0.4472 -2.5735 -1.1420 12 6 2.2453 -3.6620 0.0005 13 1 2.8861 -3.5920 0.8796 14 6 1.4814 -4.9992 0.0239 15 6 2.5080 -6.1134 -0.3097 16 16 3.4759 -5.3543 -1.6707 17 6 3.1097 -3.6042 -1.2760 18 1 -0.4850 0.8400 -0.0004 19 1 0.6891 -4.9867 -0.7245 20 1 1.0563 -5.1686 1.0132 21 1 2.0027 -7.0173 -0.6500 22 1 3.1460 -6.3271 0.5479 23 1 4.0327 -3.0565 -1.0856 24 1 2.5540 -3.1394 -2.0904 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259174.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:53 Heat of formation + Delta-G solvation = -89.309235 kcal Electronic energy + Delta-G solvation = -10215.793355 eV Core-core repulsion = 8168.082119 eV Total energy + Delta-G solvation = -2047.711236 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 190.052 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.76756 -37.40823 -34.78722 -31.36387 -28.69585 -26.37285 -23.68835 -20.87256 -18.84335 -17.47809 -17.23445 -16.61445 -15.95704 -15.25915 -15.09761 -14.58175 -13.80374 -13.58866 -13.26933 -12.91423 -12.79189 -12.77828 -12.36344 -12.28385 -11.75980 -11.37190 -10.89416 -10.77955 -10.57242 -8.68913 -8.27507 -6.51019 0.94398 1.40054 1.42551 1.46168 1.50429 2.35085 3.05266 3.68002 3.78584 3.95349 4.22239 4.31643 4.42692 4.68202 4.78293 4.80470 4.93923 5.06816 5.20485 5.58864 5.71823 5.93335 6.59978 7.28291 8.80253 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.066237 B = 0.011686 C = 0.010710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.624736 B = 2395.365420 C = 2613.833620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.220 3.780 10 H 0.019 0.981 11 F -0.249 7.249 12 C -0.108 4.108 13 H 0.094 0.906 14 C -0.124 4.124 15 C -0.048 4.048 16 S -0.349 6.349 17 C -0.035 4.035 18 H 0.267 0.733 19 H 0.064 0.936 20 H 0.101 0.899 21 H 0.120 0.880 22 H 0.110 0.890 23 H 0.092 0.908 24 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 -7.843 1.553 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.617 4.617 8 H 0.092 0.908 9 C 0.183 3.817 10 H 0.037 0.963 11 F -0.230 7.230 12 C -0.128 4.128 13 H 0.113 0.887 14 C -0.163 4.163 15 C -0.195 4.195 16 S -0.124 6.124 17 C -0.183 4.183 18 H 0.076 0.924 19 H 0.083 0.917 20 H 0.119 0.881 21 H 0.138 0.862 22 H 0.128 0.872 23 H 0.111 0.889 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.207 -8.246 0.651 9.774 hybrid contribution -0.639 1.616 0.673 1.864 sum 4.568 -6.630 1.324 8.159 Atomic orbital electron populations 1.70113 1.07862 1.28329 1.48785 1.25984 0.95640 1.03556 0.92980 0.85480 0.78320 0.77775 0.79354 1.19427 1.20868 1.18515 1.21851 0.94188 0.91375 1.54332 0.90769 1.19019 0.87143 0.93736 0.81795 0.96284 1.92649 1.77062 1.97423 1.55894 1.22541 0.97082 0.95462 0.97726 0.88722 1.22618 0.98151 0.91637 1.03850 1.24273 0.97953 1.00045 0.97229 1.87267 1.70263 1.08200 1.46644 1.23762 1.02291 0.92115 1.00143 0.92392 0.91748 0.88091 0.86186 0.87181 0.88919 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.93 12.95 21.45 0.28 -53.65 14 2 C 0.02 1.11 5.42 84.65 0.46 1.57 14 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 14 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 14 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 14 6 H -0.26 -10.86 7.11 99.48 0.71 -10.16 14 7 C -0.58 -31.09 8.30 25.60 0.21 -30.88 14 8 H 0.07 3.76 7.41 -2.91 -0.02 3.74 14 9 C 0.22 11.00 2.84 29.85 0.08 11.08 14 10 H 0.02 1.02 8.14 -2.39 -0.02 1.00 14 11 F -0.25 -13.78 15.19 44.97 0.68 -13.09 14 12 C -0.11 -4.16 2.46 -10.02 -0.02 -4.18 14 13 H 0.09 3.40 8.14 -2.38 -0.02 3.38 14 14 C -0.12 -3.89 5.77 31.67 0.18 -3.71 14 15 C -0.05 -1.22 7.38 72.71 0.54 -0.69 14 16 S -0.35 -11.60 23.26 -56.49 -1.31 -12.92 14 17 C -0.04 -1.36 5.94 72.41 0.43 -0.93 14 18 H 0.27 14.87 8.31 -92.71 -0.77 14.10 14 19 H 0.06 2.26 7.59 -2.39 -0.02 2.24 14 20 H 0.10 2.73 8.14 -2.39 -0.02 2.71 14 21 H 0.12 2.55 8.14 -2.39 -0.02 2.53 14 22 H 0.11 2.36 8.14 -2.39 -0.02 2.34 14 23 H 0.09 3.45 8.04 -2.39 -0.02 3.43 14 24 H 0.07 3.16 7.27 -2.39 -0.02 3.15 14 Total: -1.00 -61.48 219.71 4.73 -56.74 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.18 Total: 5.95 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 1.88 Total: -27.73 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.28 Total: -53.65 kcal Atomic # 9 Polarization: -13.78 SS G_CDS: 0.68 Total: -13.09 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -11.60 SS G_CDS: -1.31 Total: -12.92 kcal Total: -61.48 4.73 -56.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259174.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.566 kcal (2) G-P(sol) polarization free energy of solvation -61.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds