Wall clock time and date at job start Thu Apr 9 2020 13:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00493 * 2 1 4 4 H 1.48503 * 109.47676 * 240.00681 * 3 2 1 5 5 H 1.48502 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47110 * 120.00292 * 3 2 1 7 7 C 1.37879 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99623 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47536 * 300.00397 * 9 7 2 11 11 F 1.39900 * 109.47024 * 60.00306 * 9 7 2 12 12 C 1.52999 * 109.46839 * 180.02562 * 9 7 2 13 13 H 1.09004 * 109.99051 * 61.27205 * 12 9 7 14 14 C 1.53854 * 109.97818 * 300.00130 * 12 9 7 15 15 C 1.54272 * 108.92702 * 193.38405 * 14 12 9 16 16 S 1.83100 * 104.65178 * 27.95286 * 15 14 12 17 17 C 1.55136 * 109.97230 * 182.53344 * 12 9 7 18 18 H 0.97007 * 119.99298 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.61104 * 73.46458 * 14 12 9 20 20 H 1.08997 * 109.46333 * 313.21885 * 14 12 9 21 21 H 1.09001 * 110.40303 * 269.16331 * 15 14 12 22 22 H 1.08997 * 110.40494 * 146.74843 * 15 14 12 23 23 H 1.09006 * 110.85800 * 43.30446 * 17 12 9 24 24 H 1.08997 * 110.85873 * 279.65771 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8896 11 9 0.4462 -2.5730 -1.1426 12 6 2.2451 -3.6621 -0.0005 13 1 2.8615 -3.6254 0.8977 14 6 3.1362 -3.5918 -1.2527 15 6 3.8864 -4.9308 -1.4089 16 16 2.7902 -6.1700 -0.6245 17 6 1.4823 -5.0114 -0.0650 18 1 -0.4849 0.8402 0.0004 19 1 3.8555 -2.7800 -1.1448 20 1 2.5152 -3.4159 -2.1310 21 1 4.8457 -4.8914 -0.8928 22 1 4.0308 -5.1648 -2.4636 23 1 0.6699 -4.9637 -0.7903 24 1 1.1090 -5.2936 0.9194 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259175.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:55 Heat of formation + Delta-G solvation = -72.862840 kcal Electronic energy + Delta-G solvation = -10218.696709 eV Core-core repulsion = 8171.698642 eV Total energy + Delta-G solvation = -2046.998067 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 190.052 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.69599 -35.85464 -32.70740 -29.68190 -27.44586 -23.94878 -22.37483 -19.20668 -16.83015 -16.12722 -15.41679 -14.57918 -14.08503 -13.81134 -13.38610 -12.99574 -12.14382 -11.92144 -11.54383 -11.43681 -11.00660 -10.88631 -10.73820 -10.41344 -10.13007 -9.87194 -9.08218 -8.80515 -8.60472 -7.36438 -6.19302 -4.35967 2.26454 2.77348 3.23226 3.28331 3.29942 4.28476 5.13614 5.16221 5.24814 5.42782 5.53024 5.74588 5.91596 6.12187 6.23357 6.28703 6.57439 6.76992 6.95964 7.61232 7.75483 7.94309 8.67834 9.38610 10.87858 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.070683 B = 0.011428 C = 0.010419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.042201 B = 2449.625469 C = 2686.873976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.076 3.924 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.565 4.565 8 H 0.067 0.933 9 C 0.229 3.771 10 H 0.040 0.960 11 F -0.233 7.233 12 C -0.111 4.111 13 H 0.086 0.914 14 C -0.113 4.113 15 C -0.065 4.065 16 S -0.334 6.334 17 C -0.059 4.059 18 H 0.266 0.734 19 H 0.087 0.913 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 -5.703 -0.636 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.603 4.603 8 H 0.085 0.915 9 C 0.191 3.809 10 H 0.057 0.943 11 F -0.214 7.214 12 C -0.132 4.132 13 H 0.104 0.896 14 C -0.152 4.152 15 C -0.213 4.213 16 S -0.108 6.108 17 C -0.207 4.207 18 H 0.076 0.924 19 H 0.105 0.895 20 H 0.096 0.904 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.112 0.888 24 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.765 -6.802 -0.566 8.324 hybrid contribution 0.280 2.093 -0.156 2.118 sum 5.045 -4.708 -0.722 6.938 Atomic orbital electron populations 1.69991 1.06170 1.27411 1.47253 1.25071 0.94852 0.99704 0.93414 0.86544 0.79603 0.82364 0.78845 1.19924 1.21046 1.19928 1.21392 0.93527 0.90194 1.55168 0.91529 1.18900 0.86791 0.91970 0.83212 0.94275 1.92688 1.76314 1.97247 1.55179 1.22869 0.97529 0.93873 0.98888 0.89590 1.22203 0.98694 0.94810 0.99458 1.24025 0.99483 0.95506 1.02326 1.87150 1.27266 1.20458 1.75911 1.24391 0.97686 0.94636 1.03938 0.92403 0.89495 0.90371 0.89645 0.89435 0.88829 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.26 12.95 55.43 0.72 -24.54 14 2 C 0.08 2.06 5.42 -17.82 -0.10 1.97 14 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 14 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 14 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 14 7 C -0.57 -14.98 8.27 -34.44 -0.28 -15.27 14 8 H 0.07 1.68 6.84 -52.49 -0.36 1.32 14 9 C 0.23 5.64 2.93 -27.88 -0.08 5.55 14 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 14 11 F -0.23 -6.24 15.22 2.25 0.03 -6.21 14 12 C -0.11 -2.20 2.49 -89.05 -0.22 -2.42 14 13 H 0.09 1.65 8.14 -51.93 -0.42 1.23 14 14 C -0.11 -2.07 5.19 -25.62 -0.13 -2.20 14 15 C -0.07 -1.01 7.34 37.82 0.28 -0.73 14 16 S -0.33 -5.68 23.26 -107.50 -2.50 -8.18 14 17 C -0.06 -1.05 6.70 38.29 0.26 -0.80 14 18 H 0.27 7.27 8.31 -40.82 -0.34 6.93 14 19 H 0.09 1.59 7.19 -51.93 -0.37 1.21 14 20 H 0.08 1.55 7.53 -51.93 -0.39 1.16 14 21 H 0.08 1.19 8.14 -51.93 -0.42 0.77 14 22 H 0.09 1.22 8.14 -51.93 -0.42 0.80 14 23 H 0.09 1.75 7.49 -51.93 -0.39 1.36 14 24 H 0.10 1.57 8.14 -51.93 -0.42 1.15 14 LS Contribution 218.71 15.07 3.30 3.30 Total: -1.00 -28.50 218.71 -6.52 -35.02 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -2.76 Total: -1.16 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.28 Total: -13.91 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.72 Total: -24.54 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.03 Total: -6.21 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -5.68 SS G_CDS: -2.50 Total: -8.18 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.50 -6.52 -35.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259175.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.844 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds