Wall clock time and date at job start Thu Apr 9 2020 13:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00493 * 2 1 4 4 H 1.48503 * 109.47676 * 240.00681 * 3 2 1 5 5 H 1.48502 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47110 * 120.00292 * 3 2 1 7 7 C 1.37879 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99623 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47536 * 300.00397 * 9 7 2 11 11 F 1.39900 * 109.47024 * 60.00306 * 9 7 2 12 12 C 1.52999 * 109.46839 * 180.02562 * 9 7 2 13 13 H 1.09004 * 109.99051 * 61.27205 * 12 9 7 14 14 C 1.53854 * 109.97818 * 300.00130 * 12 9 7 15 15 C 1.54272 * 108.92702 * 193.38405 * 14 12 9 16 16 S 1.83100 * 104.65178 * 27.95286 * 15 14 12 17 17 C 1.55136 * 109.97230 * 182.53344 * 12 9 7 18 18 H 0.97007 * 119.99298 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.61104 * 73.46458 * 14 12 9 20 20 H 1.08997 * 109.46333 * 313.21885 * 14 12 9 21 21 H 1.09001 * 110.40303 * 269.16331 * 15 14 12 22 22 H 1.08997 * 110.40494 * 146.74843 * 15 14 12 23 23 H 1.09006 * 110.85800 * 43.30446 * 17 12 9 24 24 H 1.08997 * 110.85873 * 279.65771 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8896 11 9 0.4462 -2.5730 -1.1426 12 6 2.2451 -3.6621 -0.0005 13 1 2.8615 -3.6254 0.8977 14 6 3.1362 -3.5918 -1.2527 15 6 3.8864 -4.9308 -1.4089 16 16 2.7902 -6.1700 -0.6245 17 6 1.4823 -5.0114 -0.0650 18 1 -0.4849 0.8402 0.0004 19 1 3.8555 -2.7800 -1.1448 20 1 2.5152 -3.4159 -2.1310 21 1 4.8457 -4.8914 -0.8928 22 1 4.0308 -5.1648 -2.4636 23 1 0.6699 -4.9637 -0.7903 24 1 1.1090 -5.2936 0.9194 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259175.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:55 Heat of formation + Delta-G solvation = -88.857036 kcal Electronic energy + Delta-G solvation = -10219.390270 eV Core-core repulsion = 8171.698642 eV Total energy + Delta-G solvation = -2047.691628 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 190.052 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.76289 -37.42612 -34.73932 -31.19674 -29.27306 -25.67549 -24.03701 -20.85338 -18.84361 -17.57163 -17.18216 -16.37692 -15.88719 -15.55667 -15.10154 -14.60570 -13.70972 -13.55643 -13.40269 -12.86573 -12.80602 -12.73446 -12.36331 -12.26593 -11.65994 -11.43832 -10.96175 -10.71459 -10.56868 -8.70212 -8.26009 -6.49763 0.90847 1.39852 1.42629 1.43921 1.51889 2.36265 3.06556 3.67794 3.80053 3.97599 4.22323 4.27838 4.43673 4.60370 4.74101 4.77442 4.97608 5.15856 5.24381 5.61190 5.72626 5.94060 6.61250 7.29348 8.81656 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.070683 B = 0.011428 C = 0.010419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.042201 B = 2449.625469 C = 2686.873976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.018 3.982 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.220 3.780 10 H 0.015 0.985 11 F -0.249 7.249 12 C -0.104 4.104 13 H 0.094 0.906 14 C -0.110 4.110 15 C -0.055 4.055 16 S -0.330 6.330 17 C -0.058 4.058 18 H 0.267 0.733 19 H 0.088 0.912 20 H 0.058 0.942 21 H 0.109 0.891 22 H 0.107 0.893 23 H 0.080 0.920 24 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 -5.873 -0.723 8.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.614 4.614 8 H 0.096 0.904 9 C 0.183 3.817 10 H 0.033 0.967 11 F -0.230 7.230 12 C -0.124 4.124 13 H 0.113 0.887 14 C -0.148 4.148 15 C -0.203 4.203 16 S -0.104 6.104 17 C -0.206 4.206 18 H 0.076 0.924 19 H 0.106 0.894 20 H 0.076 0.924 21 H 0.127 0.873 22 H 0.125 0.875 23 H 0.099 0.901 24 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.606 -6.987 -0.652 9.638 hybrid contribution -0.302 2.103 -0.130 2.129 sum 6.304 -4.884 -0.781 8.013 Atomic orbital electron populations 1.70128 1.07953 1.28300 1.48859 1.26018 0.95643 1.03655 0.93032 0.85448 0.78258 0.77617 0.79399 1.19133 1.21087 1.18611 1.21835 0.94278 0.91062 1.54208 0.90372 1.18973 0.87150 0.93855 0.81717 0.96699 1.92647 1.77039 1.97424 1.55878 1.22710 0.96758 0.92769 1.00167 0.88732 1.22110 0.98358 0.96729 0.97632 1.24062 0.99485 0.92864 1.03877 1.87169 1.26890 1.20304 1.76020 1.24271 0.97693 0.94187 1.04469 0.92447 0.89383 0.92365 0.87291 0.87454 0.90148 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 12.95 21.45 0.28 -53.54 14 2 C 0.02 0.99 5.42 84.66 0.46 1.45 14 3 Si 0.97 42.05 29.54 68.60 2.03 44.08 14 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 14 5 H -0.29 -12.30 7.11 99.48 0.71 -11.59 14 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 14 7 C -0.58 -30.43 8.27 25.60 0.21 -30.22 14 8 H 0.08 3.85 6.84 -2.91 -0.02 3.83 14 9 C 0.22 10.99 2.93 29.85 0.09 11.08 14 10 H 0.02 0.81 8.14 -2.39 -0.02 0.79 14 11 F -0.25 -13.61 15.22 44.97 0.68 -12.93 14 12 C -0.10 -4.01 2.49 -9.77 -0.02 -4.04 14 13 H 0.09 3.49 8.14 -2.38 -0.02 3.47 14 14 C -0.11 -3.83 5.19 31.31 0.16 -3.67 14 15 C -0.06 -1.53 7.34 72.41 0.53 -1.00 14 16 S -0.33 -10.42 23.26 -56.49 -1.31 -11.74 14 17 C -0.06 -2.04 6.70 72.71 0.49 -1.55 14 18 H 0.27 14.81 8.31 -92.70 -0.77 14.03 14 19 H 0.09 3.03 7.19 -2.39 -0.02 3.01 14 20 H 0.06 2.26 7.53 -2.39 -0.02 2.24 14 21 H 0.11 2.58 8.14 -2.39 -0.02 2.56 14 22 H 0.11 2.61 8.14 -2.39 -0.02 2.59 14 23 H 0.08 3.01 7.49 -2.38 -0.02 2.99 14 24 H 0.11 3.45 8.14 -2.39 -0.02 3.43 14 Total: -1.00 -59.98 218.71 4.77 -55.21 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.18 Total: 6.86 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 1.92 Total: -27.95 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.28 Total: -53.54 kcal Atomic # 9 Polarization: -13.61 SS G_CDS: 0.68 Total: -12.93 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -10.42 SS G_CDS: -1.31 Total: -11.74 kcal Total: -59.98 4.77 -55.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259175.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.649 kcal (2) G-P(sol) polarization free energy of solvation -59.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds