Wall clock time and date at job start Thu Apr 9 2020 13:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 F 1.39902 * 109.46957 * 300.00111 * 9 7 2 12 12 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 13 13 H 1.09000 * 109.60014 * 305.32207 * 12 9 7 14 14 C 1.52938 * 109.60239 * 184.99975 * 12 9 7 15 15 C 1.53710 * 112.48919 * 209.97092 * 14 12 9 16 16 S 1.83391 * 104.96863 * 2.82339 * 15 14 12 17 17 C 1.55157 * 109.60198 * 65.46371 * 12 9 7 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 1.09000 * 108.88710 * 330.76222 * 14 12 9 20 20 H 1.08998 * 108.88971 * 89.31645 * 14 12 9 21 21 H 1.08996 * 110.33964 * 121.69869 * 15 14 12 22 22 H 1.08997 * 110.33737 * 243.95397 * 15 14 12 23 23 H 1.09000 * 111.12779 * 279.27992 * 17 12 9 24 24 H 1.08998 * 111.12956 * 43.45561 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 9 0.4463 -2.5730 1.1425 12 6 2.2454 -3.6621 0.0005 13 1 2.9342 -3.5542 -0.8373 14 6 1.4879 -4.9847 -0.1250 15 6 2.2154 -6.1471 0.5694 16 16 3.6921 -5.3855 1.3457 17 6 3.0450 -3.6633 1.3302 18 1 -0.4850 -0.8401 -0.0004 19 1 0.5002 -4.8695 0.3215 20 1 1.3708 -5.2254 -1.1816 21 1 1.5754 -6.5941 1.3302 22 1 2.5162 -6.8969 -0.1622 23 1 3.8582 -2.9381 1.3002 24 1 2.3903 -3.4817 2.1825 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259176.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:57 Heat of formation + Delta-G solvation = -93.221847 kcal Electronic energy + Delta-G solvation = -10249.259814 eV Core-core repulsion = 8201.378914 eV Total energy + Delta-G solvation = -2047.880900 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 190.052 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.15212 -37.53505 -35.00955 -31.37800 -28.50697 -26.37734 -23.88007 -20.96513 -19.38202 -17.79232 -17.04558 -16.43969 -15.83012 -15.66404 -15.25753 -14.76387 -14.25761 -13.57830 -13.37978 -12.85781 -12.72923 -12.67878 -12.45880 -11.93287 -11.83150 -11.55663 -10.91701 -10.66411 -10.52922 -8.77876 -8.75658 -6.59886 0.87442 1.31051 1.53177 1.60935 1.78801 2.51315 3.08113 3.51974 3.69949 3.89842 4.05474 4.20350 4.26972 4.47928 4.68008 4.71171 4.78818 4.95878 5.08243 5.42351 5.69732 6.03913 6.39504 7.29860 8.62811 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.065587 B = 0.011785 C = 0.010643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.808408 B = 2375.237632 C = 2630.269722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.021 4.021 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.264 1.264 6 H -0.282 1.282 7 C -0.648 4.648 8 H 0.067 0.933 9 C 0.201 3.799 10 H 0.017 0.983 11 F -0.252 7.252 12 C -0.097 4.097 13 H 0.090 0.910 14 C -0.128 4.128 15 C -0.049 4.049 16 S -0.338 6.338 17 C -0.032 4.032 18 H 0.261 0.739 19 H 0.063 0.937 20 H 0.095 0.905 21 H 0.099 0.901 22 H 0.122 0.878 23 H 0.099 0.901 24 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -8.331 -0.557 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.941 3.059 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.207 1.207 7 C -0.686 4.686 8 H 0.085 0.915 9 C 0.164 3.836 10 H 0.035 0.965 11 F -0.233 7.233 12 C -0.118 4.118 13 H 0.109 0.891 14 C -0.166 4.166 15 C -0.197 4.197 16 S -0.112 6.112 17 C -0.180 4.180 18 H 0.071 0.929 19 H 0.082 0.918 20 H 0.113 0.887 21 H 0.118 0.882 22 H 0.140 0.860 23 H 0.118 0.882 24 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.502 -7.234 -0.133 9.090 hybrid contribution -1.246 -1.089 -0.240 1.672 sum 4.256 -8.323 -0.373 9.356 Atomic orbital electron populations 1.70839 1.08112 1.30642 1.46344 1.27445 0.96412 1.07008 0.91272 0.82904 0.74408 0.70841 0.77773 1.20094 1.18797 1.20713 1.22686 0.95429 0.92330 1.58121 0.91518 1.19267 0.87703 0.95287 0.81360 0.96479 1.92667 1.76934 1.97514 1.56235 1.22456 0.97115 0.94543 0.97663 0.89141 1.22024 0.99619 0.92035 1.02939 1.23948 0.94232 0.99442 1.02040 1.87502 1.30504 1.09914 1.83285 1.24115 1.01257 0.92785 0.99876 0.92938 0.91822 0.88667 0.88208 0.85964 0.88224 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.17 13.56 21.45 0.29 -55.88 14 2 C -0.02 -1.15 5.42 84.65 0.46 -0.69 14 3 Si 1.12 48.72 29.90 68.60 2.05 50.77 14 4 H -0.28 -11.48 7.11 99.48 0.71 -10.77 14 5 H -0.26 -10.41 7.11 99.48 0.71 -9.70 14 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 14 7 C -0.65 -35.06 8.37 25.60 0.21 -34.85 14 8 H 0.07 3.47 7.39 -2.91 -0.02 3.45 14 9 C 0.20 9.92 2.31 29.85 0.07 9.99 14 10 H 0.02 0.90 8.01 -2.38 -0.02 0.88 14 11 F -0.25 -13.41 14.52 44.97 0.65 -12.75 14 12 C -0.10 -3.77 2.35 -10.08 -0.02 -3.80 14 13 H 0.09 3.46 8.14 -2.39 -0.02 3.44 14 14 C -0.13 -3.98 5.83 30.81 0.18 -3.80 14 15 C -0.05 -1.28 7.38 72.22 0.53 -0.75 14 16 S -0.34 -11.00 23.23 -56.49 -1.31 -12.31 14 17 C -0.03 -1.24 6.27 72.72 0.46 -0.78 14 18 H 0.26 16.14 6.59 -92.71 -0.61 15.53 14 19 H 0.06 2.13 7.36 -2.39 -0.02 2.11 14 20 H 0.09 2.55 8.14 -2.39 -0.02 2.53 14 21 H 0.10 2.37 8.14 -2.39 -0.02 2.35 14 22 H 0.12 2.53 8.14 -2.39 -0.02 2.51 14 23 H 0.10 3.85 7.84 -2.39 -0.02 3.84 14 24 H 0.08 3.13 7.39 -2.39 -0.02 3.11 14 Total: -1.00 -61.91 217.60 4.91 -57.00 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.34 Total: 7.83 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 1.89 Total: -34.67 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.29 Total: -55.88 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 0.65 Total: -12.75 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.05 Total: 50.77 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -1.31 Total: -12.31 kcal Total: -61.91 4.91 -57.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259176.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.217 kcal (2) G-P(sol) polarization free energy of solvation -61.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds