Wall clock time and date at job start Thu Apr 9 2020 14:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38249 * 119.99967 * 269.71897 * 10 9 7 12 12 C 1.38217 * 120.00320 * 179.81310 * 11 10 9 13 13 C 1.38262 * 119.99240 * 0.41922 * 12 11 10 14 14 C 1.38212 * 120.00297 * 359.81525 * 13 12 11 15 15 C 1.50695 * 119.99793 * 179.97438 * 14 13 12 16 16 N 1.46900 * 109.47755 * 270.02075 * 15 14 13 17 17 C 1.38218 * 119.99846 * 89.99972 * 10 9 7 18 18 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 20 20 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 21 21 H 1.08006 * 120.00293 * 0.02562 * 11 10 9 22 22 H 1.07998 * 120.00346 * 180.21372 * 12 11 10 23 23 H 1.08001 * 119.99480 * 179.78590 * 13 12 11 24 24 H 1.09006 * 109.47351 * 30.02655 * 15 14 13 25 25 H 1.08999 * 109.46934 * 150.02059 * 15 14 13 26 26 H 1.00906 * 110.99597 * 56.04738 * 16 15 14 27 27 H 1.00898 * 110.99900 * 179.97438 * 16 15 14 28 28 H 1.07998 * 120.00226 * 359.97171 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6698 -4.1705 -1.2140 12 6 3.5709 -5.2185 -1.2209 13 6 4.0263 -5.7464 -0.0269 14 6 3.5833 -5.2237 1.1734 15 6 4.0793 -5.7996 2.4747 16 7 3.1878 -6.8868 2.9006 17 6 2.6848 -4.1730 1.1803 18 1 -0.4850 -0.8400 0.0004 19 1 0.6281 -2.5591 0.8866 20 1 0.6207 -2.5548 -0.8933 21 1 2.3115 -3.7603 -2.1467 22 1 3.9168 -5.6271 -2.1589 23 1 4.7278 -6.5675 -0.0323 24 1 5.0882 -6.1892 2.3386 25 1 4.0907 -5.0198 3.2362 26 1 3.1097 -7.5922 2.1833 27 1 3.4996 -7.2899 3.7714 28 1 2.3385 -3.7648 2.1182 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261262409.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:02 Heat of formation + Delta-G solvation = 2.231654 kcal Electronic energy + Delta-G solvation = -11151.917486 eV Core-core repulsion = 9166.599298 eV Total energy + Delta-G solvation = -1985.318188 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.86869 -34.90873 -33.48109 -31.03474 -30.08871 -26.63954 -24.64628 -23.15163 -21.37207 -19.78008 -16.82559 -16.11110 -15.62885 -14.95541 -14.39566 -13.92230 -13.67387 -13.14949 -12.83491 -12.27770 -11.96772 -11.59372 -11.31957 -11.08544 -10.65855 -10.28260 -10.13877 -9.80366 -8.94629 -8.70549 -8.36033 -8.20595 -7.77764 -6.36713 -4.07722 1.94389 2.08015 3.44591 3.46438 3.65310 4.33339 4.56899 4.84808 5.12720 5.22724 5.38854 5.53410 5.55730 5.77183 5.97393 6.11956 6.29067 6.54772 6.70642 7.01361 7.05052 7.07566 7.21124 7.21802 7.43248 7.67695 7.69894 8.14523 8.44505 8.85167 9.63315 11.02276 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.048209 B = 0.008870 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.662874 B = 3155.802874 C = 3316.560590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.592 4.592 8 H 0.050 0.950 9 C 0.034 3.966 10 C -0.030 4.030 11 C -0.123 4.123 12 C -0.124 4.124 13 C -0.145 4.145 14 C -0.092 4.092 15 C 0.106 3.894 16 N -0.845 5.845 17 C -0.101 4.101 18 H 0.269 0.731 19 H 0.020 0.980 20 H 0.019 0.981 21 H 0.116 0.884 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.340 0.660 27 H 0.338 0.662 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -10.888 1.878 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.630 4.630 8 H 0.068 0.932 9 C -0.002 4.002 10 C -0.030 4.030 11 C -0.141 4.141 12 C -0.142 4.142 13 C -0.164 4.164 14 C -0.093 4.093 15 C -0.024 4.024 16 N -0.374 5.374 17 C -0.119 4.119 18 H 0.079 0.921 19 H 0.038 0.962 20 H 0.037 0.963 21 H 0.134 0.866 22 H 0.130 0.870 23 H 0.124 0.876 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.871 -8.673 1.926 11.231 hybrid contribution 1.131 -2.298 -0.159 2.566 sum 8.002 -10.971 1.766 13.694 Atomic orbital electron populations 1.70783 1.06852 1.30631 1.46476 1.25884 0.96515 1.02633 0.93707 0.83521 0.74864 0.75178 0.76602 1.20707 1.21385 1.21395 1.21895 0.94306 0.90868 1.55927 0.93168 1.18478 0.93266 0.91414 0.97066 1.20461 0.95994 0.94496 0.92077 1.21072 0.98306 0.96582 0.98186 1.20969 0.98420 0.97542 0.97231 1.20716 1.02160 1.01086 0.92404 1.19621 0.98653 0.97279 0.93717 1.20657 0.92704 0.94201 0.94860 1.58694 1.55347 1.15320 1.08059 1.20898 0.97064 0.95767 0.98207 0.92052 0.96220 0.96293 0.86606 0.87050 0.87568 0.95248 0.90385 0.84769 0.85005 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.05 13.65 55.43 0.76 -27.29 15 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 15 3 Si 1.07 25.57 29.90 -169.99 -5.08 20.49 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.59 -17.15 9.09 -34.44 -0.31 -17.46 15 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 15 9 C 0.03 0.91 4.42 -29.03 -0.13 0.79 15 10 C -0.03 -0.69 5.07 -104.63 -0.53 -1.22 15 11 C -0.12 -2.51 9.70 -39.59 -0.38 -2.89 15 12 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 15 13 C -0.14 -2.35 9.70 -39.58 -0.38 -2.74 15 14 C -0.09 -1.60 5.39 -104.63 -0.56 -2.16 15 15 C 0.11 1.46 6.91 -4.98 -0.03 1.43 15 16 N -0.84 -10.46 9.61 -11.41 -0.11 -10.57 15 17 C -0.10 -2.09 9.36 -39.58 -0.37 -2.46 15 18 H 0.27 8.24 7.22 -40.82 -0.29 7.94 15 19 H 0.02 0.54 7.96 -51.93 -0.41 0.13 15 20 H 0.02 0.51 7.94 -51.93 -0.41 0.10 15 21 H 0.12 2.29 8.06 -52.48 -0.42 1.87 15 22 H 0.11 1.58 8.06 -52.49 -0.42 1.16 15 23 H 0.11 1.41 8.06 -52.49 -0.42 0.98 15 24 H 0.03 0.35 8.09 -51.93 -0.42 -0.07 15 25 H 0.08 1.09 8.09 -51.93 -0.42 0.67 15 26 H 0.34 3.87 8.99 -39.29 -0.35 3.52 15 27 H 0.34 3.24 9.08 -39.29 -0.36 2.88 15 28 H 0.12 2.44 8.06 -52.49 -0.42 2.02 15 LS Contribution 246.97 15.07 3.72 3.72 Total: -1.00 -31.39 246.97 -7.48 -38.87 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.56 Total: 3.64 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -3.20 Total: -28.87 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.65 Total: -37.86 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.39 -7.48 -38.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262409.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.103 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds