Wall clock time and date at job start Thu Apr 9 2020 14:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38249 * 119.99967 * 269.71897 * 10 9 7 12 12 C 1.38217 * 120.00320 * 179.81310 * 11 10 9 13 13 C 1.38262 * 119.99240 * 0.41922 * 12 11 10 14 14 C 1.38212 * 120.00297 * 359.81525 * 13 12 11 15 15 C 1.50695 * 119.99793 * 179.97438 * 14 13 12 16 16 N 1.46900 * 109.47755 * 270.02075 * 15 14 13 17 17 C 1.38218 * 119.99846 * 89.99972 * 10 9 7 18 18 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 20 20 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 21 21 H 1.08006 * 120.00293 * 0.02562 * 11 10 9 22 22 H 1.07998 * 120.00346 * 180.21372 * 12 11 10 23 23 H 1.08001 * 119.99480 * 179.78590 * 13 12 11 24 24 H 1.09006 * 109.47351 * 30.02655 * 15 14 13 25 25 H 1.08999 * 109.46934 * 150.02059 * 15 14 13 26 26 H 1.00906 * 110.99597 * 56.04738 * 16 15 14 27 27 H 1.00898 * 110.99900 * 179.97438 * 16 15 14 28 28 H 1.07998 * 120.00226 * 359.97171 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6698 -4.1705 -1.2140 12 6 3.5709 -5.2185 -1.2209 13 6 4.0263 -5.7464 -0.0269 14 6 3.5833 -5.2237 1.1734 15 6 4.0793 -5.7996 2.4747 16 7 3.1878 -6.8868 2.9006 17 6 2.6848 -4.1730 1.1803 18 1 -0.4850 -0.8400 0.0004 19 1 0.6281 -2.5591 0.8866 20 1 0.6207 -2.5548 -0.8933 21 1 2.3115 -3.7603 -2.1467 22 1 3.9168 -5.6271 -2.1589 23 1 4.7278 -6.5675 -0.0323 24 1 5.0882 -6.1892 2.3386 25 1 4.0907 -5.0198 3.2362 26 1 3.1097 -7.5922 2.1833 27 1 3.4996 -7.2899 3.7714 28 1 2.3385 -3.7648 2.1182 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262409.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:02 Heat of formation + Delta-G solvation = -18.918066 kcal Electronic energy + Delta-G solvation = -11152.834607 eV Core-core repulsion = 9166.599298 eV Total energy + Delta-G solvation = -1986.235309 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.34557 -36.37701 -35.30689 -32.80606 -31.43405 -28.58515 -25.86209 -25.26562 -22.86205 -21.32224 -18.96841 -17.45763 -16.90627 -16.32080 -15.87424 -15.63116 -15.28379 -14.90243 -14.22153 -13.98157 -13.47023 -13.21946 -13.08370 -12.90948 -12.48167 -11.96615 -11.77365 -11.61769 -11.01215 -10.60941 -9.75799 -9.60459 -9.41119 -8.70447 -6.45257 0.47622 0.57922 1.50374 1.59084 1.79257 2.53283 2.90920 3.10308 3.79776 3.89790 4.02872 4.15261 4.28665 4.41118 4.62114 4.68972 4.75431 4.95377 4.97207 5.21574 5.27634 5.57583 5.67780 5.87543 5.95803 6.10666 6.14822 6.23274 6.50490 6.63368 7.35690 8.65976 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.048209 B = 0.008870 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.662874 B = 3155.802874 C = 3316.560590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.036 4.036 3 Si 1.120 2.880 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.605 4.605 8 H 0.045 0.955 9 C 0.040 3.960 10 C -0.067 4.067 11 C -0.142 4.142 12 C -0.113 4.113 13 C -0.131 4.131 14 C -0.086 4.086 15 C 0.109 3.891 16 N -0.856 5.856 17 C -0.122 4.122 18 H 0.255 0.745 19 H -0.006 1.006 20 H -0.002 1.002 21 H 0.109 0.891 22 H 0.150 0.850 23 H 0.153 0.847 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.348 0.652 27 H 0.355 0.645 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.235 -12.329 1.809 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.233 4.233 3 Si 0.940 3.060 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.643 4.643 8 H 0.064 0.936 9 C 0.003 3.997 10 C -0.067 4.067 11 C -0.160 4.160 12 C -0.131 4.131 13 C -0.149 4.149 14 C -0.086 4.086 15 C -0.021 4.021 16 N -0.388 5.388 17 C -0.141 4.141 18 H 0.064 0.936 19 H 0.013 0.987 20 H 0.016 0.984 21 H 0.128 0.872 22 H 0.168 0.832 23 H 0.170 0.830 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.161 0.839 27 H 0.170 0.830 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.485 -10.155 1.866 14.021 hybrid contribution 0.336 -1.987 -0.125 2.019 sum 9.821 -12.142 1.740 15.713 Atomic orbital electron populations 1.70915 1.07879 1.29828 1.48481 1.27524 0.96567 1.06738 0.92464 0.82911 0.74128 0.70831 0.78101 1.20476 1.19415 1.19303 1.22214 0.94240 0.92296 1.55503 0.93642 1.18270 0.93679 0.92969 0.94736 1.20221 0.97286 0.94921 0.94273 1.21131 0.99812 0.98199 0.96872 1.21364 0.96458 0.95688 0.99554 1.21235 1.01382 1.01105 0.91162 1.19993 0.96789 0.95605 0.96262 1.20617 0.94168 0.94549 0.92763 1.58589 1.55444 1.15502 1.09268 1.20864 0.98898 0.97644 0.96663 0.93562 0.98739 0.98358 0.87243 0.83204 0.82984 0.92194 0.91102 0.83891 0.83035 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.52 13.65 21.45 0.29 -59.23 15 2 C -0.04 -2.13 5.46 84.65 0.46 -1.67 15 3 Si 1.12 51.56 29.90 68.60 2.05 53.61 15 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 7 C -0.60 -36.35 9.09 25.60 0.23 -36.11 15 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 9 C 0.04 2.28 4.42 29.10 0.13 2.40 15 10 C -0.07 -3.16 5.07 -19.87 -0.10 -3.26 15 11 C -0.14 -5.77 9.70 22.27 0.22 -5.55 15 12 C -0.11 -3.52 10.05 22.27 0.22 -3.29 15 13 C -0.13 -3.68 9.70 22.27 0.22 -3.46 15 14 C -0.09 -2.79 5.39 -19.87 -0.11 -2.89 15 15 C 0.11 2.68 6.91 85.56 0.59 3.27 15 16 N -0.86 -18.69 9.61 -190.01 -1.83 -20.51 15 17 C -0.12 -5.14 9.36 22.27 0.21 -4.94 15 18 H 0.25 16.51 7.22 -92.71 -0.67 15.84 15 19 H -0.01 -0.34 7.96 -2.39 -0.02 -0.35 15 20 H 0.00 -0.11 7.94 -2.39 -0.02 -0.12 15 21 H 0.11 4.44 8.06 -2.91 -0.02 4.42 15 22 H 0.15 3.52 8.06 -2.91 -0.02 3.49 15 23 H 0.15 2.99 8.06 -2.91 -0.02 2.96 15 24 H 0.06 1.14 8.09 -2.38 -0.02 1.13 15 25 H 0.07 1.85 8.09 -2.39 -0.02 1.83 15 26 H 0.35 6.69 8.99 -89.69 -0.81 5.89 15 27 H 0.36 5.72 9.08 -89.70 -0.81 4.90 15 28 H 0.10 4.37 8.06 -2.91 -0.02 4.35 15 Total: -1.00 -70.36 246.97 2.23 -68.13 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -0.36 Total: 13.51 kcal Atomic # 6 Polarization: -57.58 SS G_CDS: 2.07 Total: -55.50 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.53 Total: -79.74 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -70.36 2.23 -68.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262409.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.211 kcal (2) G-P(sol) polarization free energy of solvation -70.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds