Wall clock time and date at job start Thu Apr 9 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 F 1.39900 * 109.46844 * 299.99318 * 9 7 2 11 11 F 1.39897 * 109.47532 * 59.99592 * 9 7 2 12 12 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 13 13 H 1.08998 * 110.62720 * 54.29467 * 12 9 7 14 14 C 1.55139 * 110.70405 * 177.40288 * 12 9 7 15 15 C 1.55116 * 101.55457 * 153.90542 * 14 12 9 16 16 N 1.47834 * 104.90925 * 323.15438 * 15 14 12 17 17 C 1.47448 * 108.56584 * 23.97691 * 16 15 14 18 18 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 19 19 H 1.09004 * 110.98764 * 272.12315 * 14 12 9 20 20 H 1.08992 * 110.99163 * 35.94065 * 14 12 9 21 21 H 1.09008 * 110.42029 * 204.23612 * 15 14 12 22 22 H 1.09007 * 110.31367 * 82.01882 * 15 14 12 23 23 H 1.00901 * 111.00162 * 261.70784 * 16 15 14 24 24 H 1.09005 * 109.88964 * 239.60625 * 17 16 15 25 25 H 1.08995 * 109.89130 * 118.41740 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 9 0.4465 -2.5730 1.1426 11 9 0.4471 -2.5736 -1.1419 12 6 2.2454 -3.6621 0.0005 13 1 2.9474 -3.5670 0.8289 14 6 1.5000 -5.0210 0.0663 15 6 2.5237 -5.9700 -0.6102 16 7 3.1329 -5.1648 -1.6899 17 6 2.9966 -3.7376 -1.3454 18 1 -0.4850 -0.8401 -0.0004 19 1 1.3144 -5.3149 1.0994 20 1 0.5698 -4.9840 -0.5006 21 1 2.0175 -6.8413 -1.0259 22 1 3.2837 -6.2800 0.1071 23 1 2.6997 -5.3651 -2.5789 24 1 2.4258 -3.2225 -2.1180 25 1 3.9828 -3.2843 -1.2456 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261313612.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:19 Heat of formation + Delta-G solvation = -118.824343 kcal Electronic energy + Delta-G solvation = -12624.375755 eV Core-core repulsion = 10079.578655 eV Total energy + Delta-G solvation = -2544.797100 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.082 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.31194 -45.24790 -37.88102 -32.97361 -30.54703 -28.84979 -25.76864 -22.58984 -21.17613 -19.57760 -17.68161 -16.62243 -15.91711 -14.75655 -14.40108 -14.35127 -13.78301 -13.31508 -12.51697 -12.19467 -12.01172 -11.65658 -11.62162 -11.12210 -10.98782 -10.87734 -10.69423 -10.43509 -10.18564 -10.11136 -8.75500 -8.56174 -8.21338 -6.62120 -4.56238 3.34820 3.36823 3.55959 4.34361 4.52031 4.96598 5.06847 5.14414 5.34041 5.56540 5.74539 5.80073 5.95014 6.17619 6.24794 6.38974 6.57787 6.61547 7.10142 7.20506 7.37851 7.63575 8.10033 8.51288 9.31730 10.75365 Molecular weight = 191.08amu Principal moments of inertia in cm(-1) A = 0.058629 B = 0.013685 C = 0.012344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.461388 B = 2045.493455 C = 2267.848386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.040 3.960 3 Si 1.079 2.921 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.663 4.663 8 H 0.074 0.926 9 C 0.386 3.614 10 F -0.232 7.232 11 F -0.232 7.232 12 C -0.129 4.129 13 H 0.092 0.908 14 C -0.154 4.154 15 C 0.050 3.950 16 N -0.688 5.688 17 C 0.063 3.937 18 H 0.280 0.720 19 H 0.074 0.926 20 H 0.068 0.932 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.334 0.666 24 H 0.066 0.934 25 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 -6.968 -1.276 8.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.171 4.171 3 Si 0.904 3.096 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.700 4.700 8 H 0.092 0.908 9 C 0.350 3.650 10 F -0.213 7.213 11 F -0.213 7.213 12 C -0.149 4.149 13 H 0.110 0.890 14 C -0.193 4.193 15 C -0.080 4.080 16 N -0.316 5.316 17 C -0.066 4.066 18 H 0.092 0.908 19 H 0.092 0.908 20 H 0.087 0.913 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.149 0.851 24 H 0.085 0.915 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.548 -5.414 -1.057 7.150 hybrid contribution -0.967 -1.597 -0.060 1.868 sum 3.581 -7.011 -1.117 7.951 Atomic orbital electron populations 1.70663 1.07026 1.32256 1.40958 1.26101 0.96348 1.03365 0.91305 0.83426 0.74886 0.74301 0.76946 1.20374 1.20853 1.20883 1.22361 0.95296 0.90084 1.62209 0.90781 1.18660 0.80435 0.95884 0.70037 1.92868 1.77438 1.97596 1.53398 1.92842 1.77506 1.97530 1.53434 1.23159 0.97971 0.93826 0.99932 0.88970 1.23230 0.98921 0.95504 1.01656 1.22857 0.95411 0.95541 0.94147 1.61837 1.59150 1.05570 1.05000 1.22475 1.00141 0.87996 0.95943 0.90839 0.90760 0.91281 0.91919 0.90799 0.85112 0.91507 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.06 13.48 55.43 0.75 -26.32 15 2 C 0.04 1.13 5.38 -17.82 -0.10 1.04 15 3 Si 1.08 24.61 29.90 -169.99 -5.08 19.53 15 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.66 -18.53 8.22 -34.44 -0.28 -18.82 15 8 H 0.07 1.98 7.74 -52.48 -0.41 1.57 15 9 C 0.39 10.09 0.96 -27.88 -0.03 10.07 15 10 F -0.23 -6.44 15.66 2.25 0.04 -6.40 15 11 F -0.23 -6.31 14.38 2.25 0.03 -6.28 15 12 C -0.13 -2.72 2.56 -88.79 -0.23 -2.95 15 13 H 0.09 1.93 8.14 -51.93 -0.42 1.51 15 14 C -0.15 -2.77 6.24 -24.48 -0.15 -2.92 15 15 C 0.05 0.75 7.57 -2.19 -0.02 0.73 15 16 N -0.69 -11.17 7.39 -110.67 -0.82 -11.99 15 17 C 0.06 1.22 6.71 -2.83 -0.02 1.20 15 18 H 0.28 8.86 5.96 -40.82 -0.24 8.61 15 19 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 20 H 0.07 1.31 7.65 -51.93 -0.40 0.91 15 21 H 0.06 0.79 8.14 -51.92 -0.42 0.37 15 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.33 4.85 8.91 -39.29 -0.35 4.50 15 24 H 0.07 1.39 7.03 -51.93 -0.37 1.02 15 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 217.79 15.07 3.28 3.28 Total: -1.00 -30.87 217.79 -5.30 -36.16 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -2.67 Total: 3.65 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.82 Total: -11.65 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.07 Total: -38.30 kcal Atomic # 9 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.87 -5.30 -36.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261313612.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.661 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds