Wall clock time and date at job start Thu Apr 9 2020 14:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00333 * 2 1 4 4 H 1.48496 * 109.46985 * 264.61539 * 3 2 1 5 5 H 1.48505 * 109.46766 * 24.61307 * 3 2 1 6 6 H 1.48500 * 109.47172 * 144.61418 * 3 2 1 7 7 C 1.37871 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99995 * 8.40515 * 7 2 1 9 9 C 1.50699 * 120.00301 * 188.40331 * 7 2 1 10 10 C 1.53001 * 108.82851 * 302.04765 * 9 7 2 11 11 F 1.39904 * 109.46756 * 304.05632 * 10 9 7 12 12 C 1.52339 * 108.86608 * 60.57292 * 9 7 2 13 13 C 1.54259 * 112.47183 * 120.89612 * 12 9 7 14 14 S 1.83762 * 102.66940 * 335.32532 * 13 12 9 15 15 C 1.54260 * 108.87213 * 183.65021 * 9 7 2 16 16 H 0.97009 * 119.99238 * 359.97438 * 1 2 3 17 17 H 1.08995 * 109.47466 * 64.05551 * 10 9 7 18 18 H 1.08999 * 109.47454 * 184.06037 * 10 9 7 19 19 H 1.09001 * 108.86639 * 241.64086 * 12 9 7 20 20 H 1.08999 * 108.86686 * 0.14606 * 12 9 7 21 21 H 1.09000 * 110.78926 * 93.67215 * 13 12 9 22 22 H 1.09002 * 110.78166 * 217.12591 * 13 12 9 23 23 H 1.09001 * 110.78280 * 21.98670 * 15 9 7 24 24 H 1.08996 * 110.78552 * 145.24389 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6106 1.9806 -1.3939 5 1 1.3944 2.6828 0.5831 6 1 3.4853 1.4756 0.8107 7 6 2.0045 -1.1940 0.0005 8 1 1.4731 -2.1244 -0.1358 9 6 3.4993 -1.2011 0.1913 10 6 4.1410 -0.3479 -0.9048 11 9 3.7456 -0.8255 -2.1589 12 6 3.8258 -0.5882 1.5472 13 6 4.5947 -1.5615 2.4644 14 16 4.1049 -3.2063 1.8075 15 6 4.0127 -2.6496 0.0567 16 1 -0.4849 0.8402 0.0004 17 1 3.8209 0.6879 -0.7930 18 1 5.2263 -0.4040 -0.8203 19 1 4.4319 0.3046 1.3936 20 1 2.8956 -0.3019 2.0377 21 1 5.6704 -1.4122 2.3718 22 1 4.2753 -1.4501 3.5006 23 1 3.3063 -3.2595 -0.5066 24 1 4.9970 -2.6692 -0.4110 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261326059.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:26 Heat of formation + Delta-G solvation = -58.004267 kcal Electronic energy + Delta-G solvation = -10600.557807 eV Core-core repulsion = 8554.204056 eV Total energy + Delta-G solvation = -2046.353751 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 190.052 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.38571 -38.46775 -34.17029 -31.20982 -28.45809 -27.05720 -24.19367 -21.08568 -18.56065 -17.80218 -17.45790 -16.65496 -15.95621 -15.65936 -15.23991 -14.97561 -14.24336 -14.04687 -13.10601 -12.92780 -12.73083 -12.55795 -12.44448 -11.95115 -11.82586 -11.03141 -10.84005 -10.69011 -10.48761 -8.55566 -8.31756 -6.34643 1.11108 1.22732 1.29915 1.41509 1.52010 2.28491 3.02259 3.64227 3.88182 4.03921 4.13564 4.18541 4.38280 4.42129 4.64521 4.73034 4.75528 4.98598 5.07921 5.45897 5.65697 6.25812 6.66881 7.26985 8.85661 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.041780 B = 0.019204 C = 0.017636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.019621 B = 1457.658164 C = 1587.261162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.013 3.987 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.304 1.304 6 H -0.186 1.186 7 C -0.499 4.499 8 H 0.027 0.973 9 C 0.005 3.995 10 C 0.056 3.944 11 F -0.227 7.227 12 C -0.125 4.125 13 C -0.043 4.043 14 S -0.357 6.357 15 C -0.024 4.024 16 H 0.264 0.736 17 H 0.049 0.951 18 H 0.106 0.894 19 H 0.094 0.906 20 H 0.060 0.940 21 H 0.117 0.883 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 1.827 2.866 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.741 3.259 4 H -0.208 1.208 5 H -0.232 1.232 6 H -0.109 1.109 7 C -0.537 4.537 8 H 0.045 0.955 9 C 0.002 3.998 10 C 0.001 3.999 11 F -0.208 7.208 12 C -0.164 4.164 13 C -0.190 4.190 14 S -0.130 6.130 15 C -0.172 4.172 16 H 0.073 0.927 17 H 0.067 0.933 18 H 0.124 0.876 19 H 0.112 0.888 20 H 0.079 0.921 21 H 0.135 0.865 22 H 0.129 0.871 23 H 0.094 0.906 24 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.458 0.797 3.405 12.940 hybrid contribution -0.631 1.572 -0.955 1.944 sum 11.827 2.369 2.451 12.308 Atomic orbital electron populations 1.70072 1.08537 1.27958 1.52049 1.25896 0.95398 1.02987 0.94115 0.86743 0.81290 0.78577 0.79333 1.20771 1.23225 1.10934 1.20989 0.90622 0.93082 1.49032 0.95512 1.19708 0.95341 0.91877 0.92891 1.22830 1.00291 0.97186 0.79635 1.92677 1.93361 1.90395 1.44382 1.22660 1.00508 0.99047 0.94206 1.24189 1.03483 0.89294 1.02067 1.87621 1.92365 1.21977 1.11077 1.24070 1.03384 0.97349 0.92389 0.92679 0.93301 0.87567 0.88831 0.92140 0.86504 0.87125 0.90573 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.12 13.96 21.45 0.30 -58.82 14 2 C 0.01 0.74 5.14 84.65 0.43 1.17 14 3 Si 0.91 40.28 22.98 68.60 1.58 41.86 14 4 H -0.28 -12.42 6.99 99.48 0.70 -11.72 14 5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 14 6 H -0.19 -6.44 4.06 99.48 0.40 -6.04 14 7 C -0.50 -27.45 7.90 25.60 0.20 -27.25 14 8 H 0.03 1.71 7.72 -2.91 -0.02 1.69 14 9 C 0.00 0.19 0.50 -52.72 -0.03 0.16 14 10 C 0.06 2.10 5.20 71.98 0.37 2.47 14 11 F -0.23 -9.92 16.69 44.97 0.75 -9.17 14 12 C -0.13 -4.42 3.95 30.80 0.12 -4.30 14 13 C -0.04 -1.24 7.44 72.41 0.54 -0.70 14 14 S -0.36 -13.13 23.26 -56.49 -1.31 -14.45 14 15 C -0.02 -0.92 6.19 72.41 0.45 -0.47 14 16 H 0.26 15.55 8.31 -92.70 -0.77 14.78 14 17 H 0.05 1.88 2.53 -2.39 -0.01 1.87 14 18 H 0.11 2.91 8.08 -2.39 -0.02 2.90 14 19 H 0.09 2.73 5.66 -2.39 -0.01 2.72 14 20 H 0.06 2.47 6.47 -2.39 -0.02 2.46 14 21 H 0.12 2.56 8.14 -2.39 -0.02 2.54 14 22 H 0.11 2.89 8.14 -2.39 -0.02 2.87 14 23 H 0.08 3.29 7.58 -2.39 -0.02 3.27 14 24 H 0.10 3.24 7.80 -2.39 -0.02 3.23 14 Total: -1.00 -66.37 201.80 4.29 -62.08 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.88 Total: 7.41 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 2.09 Total: -28.91 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.30 Total: -58.82 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 0.75 Total: -9.17 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.58 Total: 41.86 kcal Atomic # 16 Polarization: -13.13 SS G_CDS: -1.31 Total: -14.45 kcal Total: -66.37 4.29 -62.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261326059.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.073 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds