Wall clock time and date at job start Thu Apr 9 2020 13:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47001 * 2 1 4 4 C 1.50695 * 109.47345 * 120.00039 * 2 1 3 5 5 H 1.08007 * 120.00175 * 114.35828 * 4 2 1 6 6 C 1.37882 * 120.00115 * 294.36221 * 4 2 1 7 7 N 1.31513 * 119.99704 * 156.98779 * 6 4 2 8 8 Si 1.86797 * 120.00018 * 336.98587 * 6 4 2 9 9 H 1.48500 * 109.47161 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47067 * 300.00327 * 8 6 4 11 11 H 1.48494 * 109.46952 * 59.99910 * 8 6 4 12 12 C 1.50700 * 109.47089 * 240.00310 * 2 1 3 13 13 C 1.38271 * 119.94345 * 299.72676 * 12 2 1 14 14 C 1.38143 * 120.05459 * 179.72603 * 13 12 2 15 15 C 1.38736 * 119.94170 * 0.54595 * 14 13 12 16 16 O 1.35899 * 120.05427 * 179.74909 * 15 14 13 17 17 C 1.38726 * 119.89132 * 359.72638 * 15 14 13 18 18 C 1.38150 * 119.94502 * 359.97438 * 17 15 14 19 19 H 1.08999 * 109.47196 * 293.28138 * 1 2 3 20 20 H 1.09002 * 109.47344 * 53.28347 * 1 2 3 21 21 H 1.09004 * 109.46915 * 173.28650 * 1 2 3 22 22 H 0.96999 * 120.00198 * 354.92377 * 7 6 4 23 23 H 1.08000 * 119.96897 * 359.97438 * 13 12 2 24 24 H 1.07993 * 120.02725 * 180.26873 * 14 13 12 25 25 H 0.96700 * 114.00432 * 269.97469 * 16 15 14 26 26 H 1.08002 * 120.03282 * 179.97438 * 17 15 14 27 27 H 1.07998 * 119.97204 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8101 -0.9525 3.5403 8 14 1.4627 1.6528 2.6645 9 1 1.2445 1.9735 4.0980 10 1 2.6265 2.4233 2.1570 11 1 0.2515 2.0154 1.8857 12 6 2.0323 -0.7103 -1.2305 13 6 1.7023 -2.0358 -1.4454 14 6 2.1568 -2.6875 -2.5754 15 6 2.9544 -2.0143 -3.4893 16 8 3.4071 -2.6548 -4.5992 17 6 3.2889 -0.6862 -3.2686 18 6 2.8267 -0.0370 -2.1401 19 1 -0.3633 0.4062 0.9440 20 1 -0.3634 0.6144 -0.8238 21 1 -0.3633 -1.0207 -0.1201 22 1 1.9107 -1.9118 3.4378 23 1 1.0853 -2.5607 -0.7311 24 1 1.8951 -3.7215 -2.7449 25 1 4.2596 -3.0951 -4.4791 26 1 3.9100 -0.1600 -3.9784 27 1 3.0864 0.9970 -1.9681 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329714.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:14 Heat of formation + Delta-G solvation = -33.413778 kcal Electronic energy + Delta-G solvation = -11508.858843 eV Core-core repulsion = 9424.276291 eV Total energy + Delta-G solvation = -2084.582552 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.27658 -36.77841 -33.94445 -31.46411 -30.46761 -27.88139 -24.73379 -22.52651 -22.11421 -19.59041 -18.02986 -17.41028 -15.50093 -15.10412 -14.65392 -13.85069 -13.41886 -13.04994 -12.75693 -12.39207 -12.11004 -11.59313 -11.53511 -10.97939 -10.53695 -10.36068 -10.05533 -9.78978 -9.74251 -9.02356 -8.47097 -8.22391 -7.82602 -6.47058 -4.08424 1.82387 1.88336 3.39200 3.43055 3.60702 4.18471 4.49161 4.62603 5.17832 5.39028 5.39785 5.74877 5.98625 6.07846 6.27882 6.36961 6.50749 6.61450 6.74301 6.88463 6.92254 7.05716 7.23347 7.38512 7.57222 7.96369 8.10248 8.35928 8.87587 9.56470 10.87905 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.062274 B = 0.010020 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.517021 B = 2793.641208 C = 2932.030704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 H 0.028 0.972 4 C -0.600 4.600 5 H 0.059 0.941 6 C 0.038 3.962 7 N -0.898 5.898 8 Si 1.037 2.963 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.276 1.276 12 C -0.031 4.031 13 C -0.095 4.095 14 C -0.147 4.147 15 C 0.068 3.932 16 O -0.505 6.505 17 C -0.146 4.146 18 C -0.119 4.119 19 H 0.053 0.947 20 H 0.023 0.977 21 H 0.044 0.956 22 H 0.269 0.731 23 H 0.126 0.874 24 H 0.118 0.882 25 H 0.380 0.620 26 H 0.118 0.882 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 0.157 -10.549 10.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.046 0.954 4 C -0.637 4.637 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.531 5.531 8 Si 0.865 3.135 9 H -0.211 1.211 10 H -0.210 1.210 11 H -0.202 1.202 12 C -0.031 4.031 13 C -0.113 4.113 14 C -0.165 4.165 15 C 0.024 3.976 16 O -0.314 6.314 17 C -0.164 4.164 18 C -0.137 4.137 19 H 0.072 0.928 20 H 0.042 0.958 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.144 0.856 24 H 0.136 0.864 25 H 0.234 0.766 26 H 0.136 0.864 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.511 1.545 -9.657 9.793 hybrid contribution 0.831 -1.492 -0.948 1.953 sum 1.342 0.053 -10.605 10.690 Atomic orbital electron populations 1.22171 0.98045 1.00018 0.99557 1.18190 0.92350 0.95457 0.91398 0.95383 1.21888 1.40800 1.10604 0.90458 0.92312 1.25724 0.93290 1.05736 0.92058 1.70850 1.43962 1.06387 1.31896 0.84137 0.77256 0.76071 0.76066 1.21139 1.20973 1.20222 1.20397 0.93703 0.93904 0.95087 1.20972 0.99803 0.94675 0.95883 1.21345 1.00652 1.00008 0.94534 1.18339 0.99861 0.91519 0.87877 1.84809 1.41195 1.71557 1.33812 1.21256 1.02187 0.94738 0.98237 1.21020 0.98854 1.00012 0.93826 0.92829 0.95754 0.93668 0.92095 0.85602 0.86414 0.76580 0.86423 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.83 37.16 0.33 -2.73 15 2 C 0.05 1.06 2.07 -92.93 -0.19 0.86 15 3 H 0.03 0.65 6.45 -51.93 -0.33 0.32 15 4 C -0.60 -16.46 8.47 -34.44 -0.29 -16.76 15 5 H 0.06 1.74 7.77 -52.48 -0.41 1.34 15 6 C 0.04 1.07 5.20 -17.82 -0.09 0.98 15 7 N -0.90 -27.02 13.70 55.43 0.76 -26.26 15 8 Si 1.04 24.62 26.44 -169.99 -4.49 20.13 15 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 11 H -0.28 -6.08 6.14 56.52 0.35 -5.73 15 12 C -0.03 -0.65 4.75 -104.60 -0.50 -1.15 15 13 C -0.10 -1.90 8.56 -39.60 -0.34 -2.24 15 14 C -0.15 -2.58 9.99 -39.43 -0.39 -2.98 15 15 C 0.07 1.14 6.70 -39.22 -0.26 0.88 15 16 O -0.50 -7.29 13.50 -19.42 -0.26 -7.56 15 17 C -0.15 -2.46 9.99 -39.43 -0.39 -2.85 15 18 C -0.12 -2.23 9.66 -39.60 -0.38 -2.61 15 19 H 0.05 1.21 5.46 -51.93 -0.28 0.93 15 20 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.04 0.95 7.19 -51.93 -0.37 0.58 15 22 H 0.27 8.06 8.73 -40.82 -0.36 7.71 15 23 H 0.13 2.55 7.55 -52.49 -0.40 2.16 15 24 H 0.12 1.81 8.06 -52.49 -0.42 1.38 15 25 H 0.38 3.62 9.06 45.56 0.41 4.03 15 26 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 27 H 0.12 2.05 7.94 -52.49 -0.42 1.63 15 LS Contribution 232.61 15.07 3.51 3.51 Total: -1.00 -30.33 232.61 -5.28 -35.62 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -2.27 Total: 3.15 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -2.52 Total: -28.59 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.76 Total: -26.26 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.26 Total: -7.56 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.49 Total: 20.13 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.33 -5.28 -35.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329714.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.203 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds