Wall clock time and date at job start Thu Apr 9 2020 13:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47001 * 2 1 4 4 C 1.50695 * 109.47345 * 120.00039 * 2 1 3 5 5 H 1.08007 * 120.00175 * 114.35828 * 4 2 1 6 6 C 1.37882 * 120.00115 * 294.36221 * 4 2 1 7 7 N 1.31513 * 119.99704 * 156.98779 * 6 4 2 8 8 Si 1.86797 * 120.00018 * 336.98587 * 6 4 2 9 9 H 1.48500 * 109.47161 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47067 * 300.00327 * 8 6 4 11 11 H 1.48494 * 109.46952 * 59.99910 * 8 6 4 12 12 C 1.50700 * 109.47089 * 240.00310 * 2 1 3 13 13 C 1.38271 * 119.94345 * 299.72676 * 12 2 1 14 14 C 1.38143 * 120.05459 * 179.72603 * 13 12 2 15 15 C 1.38736 * 119.94170 * 0.54595 * 14 13 12 16 16 O 1.35899 * 120.05427 * 179.74909 * 15 14 13 17 17 C 1.38726 * 119.89132 * 359.72638 * 15 14 13 18 18 C 1.38150 * 119.94502 * 359.97438 * 17 15 14 19 19 H 1.08999 * 109.47196 * 293.28138 * 1 2 3 20 20 H 1.09002 * 109.47344 * 53.28347 * 1 2 3 21 21 H 1.09004 * 109.46915 * 173.28650 * 1 2 3 22 22 H 0.96999 * 120.00198 * 354.92377 * 7 6 4 23 23 H 1.08000 * 119.96897 * 359.97438 * 13 12 2 24 24 H 1.07993 * 120.02725 * 180.26873 * 14 13 12 25 25 H 0.96700 * 114.00432 * 269.97469 * 16 15 14 26 26 H 1.08002 * 120.03282 * 179.97438 * 17 15 14 27 27 H 1.07998 * 119.97204 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8101 -0.9525 3.5403 8 14 1.4627 1.6528 2.6645 9 1 1.2445 1.9735 4.0980 10 1 2.6265 2.4233 2.1570 11 1 0.2515 2.0154 1.8857 12 6 2.0323 -0.7103 -1.2305 13 6 1.7023 -2.0358 -1.4454 14 6 2.1568 -2.6875 -2.5754 15 6 2.9544 -2.0143 -3.4893 16 8 3.4071 -2.6548 -4.5992 17 6 3.2889 -0.6862 -3.2686 18 6 2.8267 -0.0370 -2.1401 19 1 -0.3633 0.4062 0.9440 20 1 -0.3634 0.6144 -0.8238 21 1 -0.3633 -1.0207 -0.1201 22 1 1.9107 -1.9118 3.4378 23 1 1.0853 -2.5607 -0.7311 24 1 1.8951 -3.7215 -2.7449 25 1 4.2596 -3.0951 -4.4791 26 1 3.9100 -0.1600 -3.9784 27 1 3.0864 0.9970 -1.9681 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329714.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:13 Heat of formation + Delta-G solvation = -54.222644 kcal Electronic energy + Delta-G solvation = -11509.761183 eV Core-core repulsion = 9424.276291 eV Total energy + Delta-G solvation = -2085.484892 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65613 -38.15107 -35.74816 -33.41204 -31.86895 -29.40046 -26.74294 -24.09047 -23.56241 -21.29887 -19.48889 -19.26918 -17.01124 -16.46882 -16.11734 -15.54156 -15.10252 -14.68979 -14.36878 -14.10206 -13.70682 -13.36695 -12.90722 -12.66912 -12.35085 -12.04792 -11.67420 -11.53094 -11.30560 -11.05077 -10.37225 -9.86326 -9.33760 -8.66341 -6.31233 0.42036 0.47417 1.50076 1.55753 1.75408 2.52835 2.79738 3.03962 3.38113 4.00245 4.10649 4.18269 4.56230 4.58037 4.70776 4.82346 4.92572 5.07861 5.14733 5.24253 5.45857 5.49475 5.59692 5.85623 5.99321 6.06226 6.18268 6.60833 6.89750 7.42134 8.63583 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.062274 B = 0.010020 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.517021 B = 2793.641208 C = 2932.030704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.043 3.957 3 H 0.036 0.964 4 C -0.598 4.598 5 H 0.018 0.982 6 C -0.013 4.013 7 N -0.933 5.933 8 Si 1.077 2.923 9 H -0.291 1.291 10 H -0.264 1.264 11 H -0.246 1.246 12 C -0.064 4.064 13 C -0.112 4.112 14 C -0.151 4.151 15 C 0.081 3.919 16 O -0.505 6.505 17 C -0.142 4.142 18 C -0.122 4.122 19 H 0.042 0.958 20 H 0.053 0.947 21 H 0.039 0.961 22 H 0.253 0.747 23 H 0.107 0.893 24 H 0.137 0.863 25 H 0.406 0.594 26 H 0.150 0.850 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 1.496 -12.900 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 H 0.054 0.946 4 C -0.636 4.636 5 H 0.037 0.963 6 C -0.212 4.212 7 N -0.568 5.568 8 Si 0.898 3.102 9 H -0.218 1.218 10 H -0.189 1.189 11 H -0.170 1.170 12 C -0.064 4.064 13 C -0.130 4.130 14 C -0.169 4.169 15 C 0.036 3.964 16 O -0.318 6.318 17 C -0.160 4.160 18 C -0.140 4.140 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.125 0.875 24 H 0.155 0.845 25 H 0.264 0.736 26 H 0.167 0.833 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.859 2.861 -12.043 12.408 hybrid contribution 0.813 -2.057 -0.353 2.240 sum 1.672 0.804 -12.395 12.533 Atomic orbital electron populations 1.22072 0.96893 1.00335 1.00106 1.18125 0.93287 0.95437 0.90727 0.94594 1.22055 1.39614 1.09222 0.92679 0.96326 1.27137 0.92773 1.09427 0.91878 1.70978 1.47197 1.05641 1.33032 0.83641 0.79122 0.71164 0.76260 1.21760 1.18881 1.17010 1.20299 0.96131 0.94565 0.95451 1.20902 1.00603 0.94717 0.96776 1.21514 1.00548 1.00937 0.93903 1.18404 0.98684 0.91697 0.87583 1.84746 1.42993 1.71581 1.32446 1.21554 1.01714 0.94754 0.97956 1.21203 0.98034 1.00819 0.93902 0.93880 0.92822 0.94192 0.93818 0.87526 0.84536 0.73581 0.83269 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 8.83 71.98 0.64 -5.17 15 2 C 0.04 2.00 2.07 -12.29 -0.03 1.97 15 3 H 0.04 1.60 6.45 -2.39 -0.02 1.59 15 4 C -0.60 -33.64 8.47 25.60 0.22 -33.42 15 5 H 0.02 1.16 7.77 -2.91 -0.02 1.13 15 6 C -0.01 -0.77 5.20 84.66 0.44 -0.33 15 7 N -0.93 -58.13 13.70 21.45 0.29 -57.84 15 8 Si 1.08 48.97 26.44 68.60 1.81 50.78 15 9 H -0.29 -13.47 7.11 99.48 0.71 -12.76 15 10 H -0.26 -11.09 7.11 99.48 0.71 -10.39 15 11 H -0.25 -9.94 6.14 99.48 0.61 -9.33 15 12 C -0.06 -2.67 4.75 -19.85 -0.09 -2.77 15 13 C -0.11 -4.46 8.56 22.25 0.19 -4.27 15 14 C -0.15 -5.05 9.99 22.37 0.22 -4.82 15 15 C 0.08 2.46 6.70 22.51 0.15 2.61 15 16 O -0.51 -12.51 13.50 -92.42 -1.25 -13.76 15 17 C -0.14 -4.26 9.99 22.37 0.22 -4.04 15 18 C -0.12 -4.25 9.66 22.26 0.22 -4.04 15 19 H 0.04 1.88 5.46 -2.39 -0.01 1.87 15 20 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.04 1.69 7.19 -2.39 -0.02 1.67 15 22 H 0.25 16.01 8.73 -92.71 -0.81 15.20 15 23 H 0.11 4.53 7.55 -2.91 -0.02 4.51 15 24 H 0.14 3.94 8.06 -2.91 -0.02 3.92 15 25 H 0.41 5.95 9.06 -74.06 -0.67 5.27 15 26 H 0.15 3.53 8.06 -2.91 -0.02 3.51 15 27 H 0.14 4.22 7.94 -2.91 -0.02 4.20 15 Total: -1.00 -66.17 232.61 3.40 -62.76 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.36 Total: 12.32 kcal Atomic # 6 Polarization: -56.45 SS G_CDS: 2.18 Total: -54.28 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.29 Total: -57.84 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.25 Total: -13.76 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.81 Total: 50.78 kcal Total: -66.17 3.40 -62.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329714.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.542 kcal (2) G-P(sol) polarization free energy of solvation -66.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds