Wall clock time and date at job start Thu Apr 9 2020 13:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46965 * 2 1 4 4 C 1.53004 * 109.46993 * 240.00824 * 2 1 3 5 5 C 1.50703 * 109.47366 * 64.99456 * 4 2 1 6 6 H 1.08002 * 119.99504 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00275 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00065 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99773 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47060 * 89.99731 * 9 7 5 11 11 H 1.48494 * 109.47318 * 209.99823 * 9 7 5 12 12 H 1.48508 * 109.47117 * 329.99793 * 9 7 5 13 13 C 1.50690 * 109.47633 * 120.00533 * 2 1 3 14 14 C 1.38682 * 120.41929 * 239.72354 * 13 2 1 15 15 C 1.38625 * 118.41677 * 180.27483 * 14 13 2 16 16 C 1.38221 * 119.16809 * 0.02562 * 15 14 13 17 17 N 1.31860 * 120.76138 * 359.97438 * 16 15 14 18 18 C 1.31881 * 121.72574 * 359.97438 * 17 16 15 19 19 H 1.08998 * 109.47629 * 59.98907 * 1 2 3 20 20 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 21 21 H 1.09012 * 109.46797 * 299.99398 * 1 2 3 22 22 H 1.08996 * 109.46945 * 184.99622 * 4 2 1 23 23 H 1.09004 * 109.46818 * 304.99675 * 4 2 1 24 24 H 0.97001 * 119.99684 * 179.97438 * 8 7 5 25 25 H 1.07993 * 120.78870 * 0.26805 * 14 13 2 26 26 H 1.08004 * 120.41613 * 179.97438 * 15 14 13 27 27 H 1.07994 * 119.62350 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.62232 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4767 6 1 1.0804 0.9748 -2.3756 7 6 1.9921 -0.4018 -3.7285 8 7 1.6437 0.2772 -4.7995 9 14 2.9613 -1.9891 -3.9033 10 1 2.0213 -3.1328 -4.0199 11 1 3.8097 -1.9197 -5.1200 12 1 3.8235 -2.1768 -2.7087 13 6 2.0324 -0.7105 1.2303 14 6 2.8350 -0.0466 2.1459 15 6 3.2786 -0.7418 3.2602 16 6 2.9095 -2.0641 3.4203 17 7 2.1448 -2.6635 2.5288 18 6 1.7036 -2.0332 1.4577 19 1 -0.3634 0.5140 -0.8898 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8902 22 1 3.1262 -0.7993 -1.2058 23 1 1.6053 -1.7197 -1.2954 24 1 1.8909 -0.0457 -5.6801 25 1 3.1079 0.9872 1.9944 26 1 3.9055 -0.2564 3.9937 27 1 3.2513 -2.6128 4.2854 28 1 1.0787 -2.5571 0.7495 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107547420.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:35 Heat of formation + Delta-G solvation = -3.939300 kcal Electronic energy + Delta-G solvation = -11361.252860 eV Core-core repulsion = 9375.667079 eV Total energy + Delta-G solvation = -1985.585781 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.13055 -37.16590 -34.51259 -33.06834 -31.21889 -29.22911 -25.73309 -24.52877 -23.71812 -20.93410 -19.05303 -17.90512 -17.18918 -16.27554 -15.94559 -15.10191 -14.92060 -14.66755 -14.49719 -13.89409 -13.71760 -13.33377 -12.93545 -12.79458 -12.43526 -11.87288 -11.70025 -11.42799 -11.25306 -10.75436 -10.62507 -10.29751 -9.76560 -8.28022 -6.30106 0.26174 0.41537 1.33831 1.35678 1.46589 2.35233 2.94024 3.07408 3.58856 3.92560 3.97712 4.16811 4.20267 4.44676 4.50292 4.61591 4.77831 4.98904 4.99684 5.16005 5.23219 5.32409 5.36613 5.43075 5.65033 5.70674 5.88178 6.30384 6.76887 7.08430 7.33782 8.88289 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.049763 B = 0.010236 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.533747 B = 2734.723260 C = 2981.566410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.034 4.034 3 H 0.069 0.931 4 C 0.001 3.999 5 C -0.518 4.518 6 H 0.043 0.957 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.939 3.061 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.255 1.255 13 C -0.125 4.125 14 C -0.087 4.087 15 C -0.162 4.162 16 C 0.073 3.927 17 N -0.510 5.510 18 C 0.083 3.917 19 H 0.047 0.953 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.009 0.991 23 H 0.017 0.983 24 H 0.265 0.735 25 H 0.149 0.851 26 H 0.169 0.831 27 H 0.183 0.817 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 -2.942 15.687 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.053 4.053 3 H 0.088 0.912 4 C -0.037 4.037 5 C -0.556 4.556 6 H 0.061 0.939 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.179 1.179 13 C -0.127 4.127 14 C -0.113 4.113 15 C -0.181 4.181 16 C -0.083 4.083 17 N -0.219 5.219 18 C -0.073 4.073 19 H 0.066 0.934 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.028 0.972 23 H 0.036 0.964 24 H 0.074 0.926 25 H 0.166 0.834 26 H 0.187 0.813 27 H 0.200 0.800 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.895 -3.825 15.634 16.354 hybrid contribution 0.452 0.443 -1.002 1.185 sum 3.348 -3.382 14.633 15.387 Atomic orbital electron populations 1.21670 0.94006 1.01646 1.01007 1.19934 0.96416 0.98423 0.90559 0.91224 1.19554 0.95624 0.95687 0.92785 1.21410 1.34493 1.08892 0.90836 0.93859 1.25864 0.96820 1.00472 0.95644 1.70044 1.48852 1.41422 0.98700 0.85819 0.79544 0.80218 0.78060 1.19189 1.20973 1.17905 1.21124 0.98463 0.95874 0.97221 1.21873 0.94801 1.01271 0.93306 1.22473 1.01098 0.95808 0.98702 1.23296 0.93887 0.93284 0.97873 1.67673 1.11346 1.39574 1.03305 1.22613 0.98053 0.91996 0.94667 0.93420 0.92846 0.92114 0.97219 0.96438 0.92587 0.83367 0.81302 0.79990 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.82 71.98 0.63 -3.88 15 2 C -0.03 -1.30 2.53 -11.54 -0.03 -1.33 15 3 H 0.07 2.66 7.93 -2.39 -0.02 2.64 15 4 C 0.00 0.04 3.26 29.85 0.10 0.14 15 5 C -0.52 -29.24 8.96 25.60 0.23 -29.01 15 6 H 0.04 2.65 7.30 -2.91 -0.02 2.63 15 7 C 0.01 0.51 5.47 84.66 0.46 0.98 15 8 N -0.95 -59.23 13.96 21.45 0.30 -58.93 15 9 Si 0.94 44.86 27.47 68.60 1.88 46.75 15 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 15 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 15 12 H -0.26 -11.63 6.54 99.48 0.65 -10.98 15 13 C -0.12 -4.11 4.79 -19.77 -0.09 -4.20 15 14 C -0.09 -2.31 9.81 22.47 0.22 -2.09 15 15 C -0.16 -3.48 10.11 22.36 0.23 -3.26 15 16 C 0.07 1.76 11.18 84.68 0.95 2.71 15 17 N -0.51 -15.91 10.36 -195.85 -2.03 -17.94 15 18 C 0.08 2.75 9.95 84.67 0.84 3.60 15 19 H 0.05 1.93 6.95 -2.39 -0.02 1.91 15 20 H 0.05 1.83 7.41 -2.39 -0.02 1.81 15 21 H 0.06 1.84 8.14 -2.38 -0.02 1.82 15 22 H 0.01 0.45 7.20 -2.39 -0.02 0.44 15 23 H 0.02 0.80 7.03 -2.38 -0.02 0.78 15 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 15 25 H 0.15 3.37 8.00 -2.91 -0.02 3.35 15 26 H 0.17 2.26 8.06 -2.91 -0.02 2.24 15 27 H 0.18 2.96 8.06 -2.91 -0.02 2.94 15 28 H 0.15 4.88 7.19 -2.91 -0.02 4.86 15 Total: -1.00 -66.22 239.00 4.77 -61.46 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.08 Total: 5.01 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.54 Total: -36.35 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.73 Total: -76.86 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -66.22 4.77 -61.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107547420.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.519 kcal (2) G-P(sol) polarization free energy of solvation -66.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds