Wall clock time and date at job start Thu Apr 9 2020 13:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46945 * 239.99418 * 3 2 1 5 5 H 1.48497 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46999 * 119.99557 * 3 2 1 7 7 C 1.39872 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00431 * 197.96904 * 7 2 1 9 9 C 1.41312 * 119.99970 * 17.97277 * 7 2 1 10 10 C 1.41001 * 120.07835 * 204.62579 * 9 7 2 11 11 C 1.36332 * 120.33689 * 179.73882 * 10 9 7 12 12 C 1.39206 * 120.50614 * 0.56141 * 11 10 9 13 13 O 1.35405 * 119.92187 * 179.71814 * 12 11 10 14 14 C 1.40859 * 120.15001 * 359.44006 * 12 11 10 15 15 C 1.46877 * 120.17178 * 180.29959 * 14 12 11 16 16 O 1.21283 * 120.00241 * 359.97438 * 15 14 12 17 17 C 1.39388 * 119.65707 * 0.27193 * 14 12 11 18 18 H 0.96996 * 120.00461 * 0.02562 * 1 2 3 19 19 H 1.08000 * 119.83212 * 0.04534 * 10 9 7 20 20 H 1.07997 * 119.74607 * 180.29488 * 11 10 9 21 21 H 0.96708 * 114.00009 * 269.72031 * 13 12 11 22 22 H 1.08002 * 119.99895 * 179.97438 * 15 14 12 23 23 H 1.07998 * 120.24505 * 179.97438 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0082 -1.2113 0.0005 8 1 3.0487 -1.2341 0.2891 9 6 1.3534 -2.4054 -0.3765 10 6 1.8272 -3.6488 0.0899 11 6 1.1963 -4.8037 -0.2663 12 6 0.0845 -4.7724 -1.1034 13 8 -0.5296 -5.9271 -1.4543 14 6 -0.4066 -3.5418 -1.5816 15 6 -1.5836 -3.5077 -2.4595 16 8 -2.1350 -4.5408 -2.7750 17 6 0.2298 -2.3566 -1.2167 18 1 -0.4850 0.8400 -0.0004 19 1 2.6913 -3.6862 0.7366 20 1 1.5645 -5.7505 0.1003 21 1 -0.1821 -6.3273 -2.2632 22 1 -1.9581 -2.5626 -2.8242 23 1 -0.1385 -1.4078 -1.5782 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115804287.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:47 Heat of formation + Delta-G solvation = -66.383278 kcal Electronic energy + Delta-G solvation = -11291.287514 eV Core-core repulsion = 9069.442202 eV Total energy + Delta-G solvation = -2221.845312 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.89430 -37.12643 -35.78011 -33.37777 -30.30480 -29.17541 -24.99679 -23.51413 -21.29784 -19.86182 -17.39464 -17.06991 -15.88971 -14.97478 -14.58752 -14.34126 -13.55035 -13.26298 -13.00603 -12.70249 -11.88833 -11.56945 -11.30816 -10.94131 -10.86302 -10.31139 -10.14861 -9.64861 -9.27830 -8.61326 -7.83224 -7.46603 -6.95228 -4.50289 1.80104 2.62677 2.98527 2.99129 3.03772 3.52201 3.80720 4.41968 5.16673 5.28599 5.54710 6.01631 6.19154 6.56455 6.77060 6.88618 7.04330 7.22115 7.34025 7.62491 7.72560 7.93281 8.28445 8.33655 8.56567 8.66425 8.87611 10.00692 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.055797 B = 0.011443 C = 0.009755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.700442 B = 2446.275665 C = 2869.605540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.089 3.911 10 C -0.183 4.183 11 C -0.125 4.125 12 C 0.021 3.979 13 O -0.488 6.488 14 C -0.196 4.196 15 C 0.384 3.616 16 O -0.476 6.476 17 C -0.102 4.102 18 H 0.285 0.715 19 H 0.101 0.899 20 H 0.100 0.900 21 H 0.360 0.640 22 H 0.085 0.915 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 0.612 -2.360 3.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.086 3.914 10 C -0.203 4.203 11 C -0.143 4.143 12 C -0.025 4.025 13 O -0.295 6.295 14 C -0.197 4.197 15 C 0.245 3.755 16 O -0.351 6.351 17 C -0.122 4.122 18 H 0.096 0.904 19 H 0.119 0.881 20 H 0.118 0.882 21 H 0.213 0.787 22 H 0.102 0.898 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.226 0.342 -1.991 2.363 hybrid contribution 0.723 0.842 -0.199 1.128 sum 1.949 1.185 -2.190 3.162 Atomic orbital electron populations 1.69789 1.07619 1.29841 1.34656 1.25934 0.94789 1.01550 0.92059 0.86293 0.80119 0.79851 0.80112 1.18690 1.20209 1.18908 1.19532 0.98367 0.91042 1.39736 0.90044 1.17599 0.91663 0.92380 0.89723 1.20808 1.02640 0.92514 1.04318 1.20599 0.95616 0.97806 1.00307 1.18216 0.96234 0.84171 1.03853 1.84747 1.61916 1.37018 1.45835 1.20952 1.00262 0.94584 1.03938 1.23907 0.82326 0.92305 0.76981 1.90430 1.55597 1.38477 1.50606 1.21643 0.97112 0.95638 0.97776 0.90402 0.88072 0.88193 0.78734 0.89835 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.12 10.97 55.54 0.61 -18.51 14 2 C 0.07 1.75 5.13 -17.35 -0.09 1.66 14 3 Si 0.91 17.41 29.60 -169.99 -5.03 12.38 14 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 14 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 14 7 C -0.46 -11.28 9.04 -37.80 -0.34 -11.63 14 8 H 0.08 1.91 7.91 -52.48 -0.41 1.50 14 9 C 0.09 2.22 5.57 -106.88 -0.60 1.63 14 10 C -0.18 -4.26 9.71 -39.22 -0.38 -4.64 14 11 C -0.12 -2.79 9.90 -39.91 -0.39 -3.18 14 12 C 0.02 0.49 6.74 -38.23 -0.26 0.23 14 13 O -0.49 -10.69 11.54 -39.86 -0.46 -11.15 14 14 C -0.20 -4.54 5.88 -104.98 -0.62 -5.16 14 15 C 0.38 7.99 11.44 34.23 0.39 8.39 14 16 O -0.48 -10.83 15.97 -16.40 -0.26 -11.09 14 17 C -0.10 -2.47 8.44 -38.35 -0.32 -2.79 14 18 H 0.28 6.24 8.30 -40.82 -0.34 5.90 14 19 H 0.10 2.16 8.06 -52.49 -0.42 1.74 14 20 H 0.10 1.99 8.06 -52.49 -0.42 1.56 14 21 H 0.36 6.36 9.06 45.56 0.41 6.77 14 22 H 0.09 1.46 8.06 -52.49 -0.42 1.04 14 23 H 0.13 3.14 6.16 -52.49 -0.32 2.82 14 LS Contribution 216.84 15.07 3.27 3.27 Total: -1.00 -28.04 216.84 -5.21 -33.25 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -0.73 Total: 7.36 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.61 Total: -15.50 kcal Atomic # 7 Polarization: -19.12 SS G_CDS: 0.61 Total: -18.51 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.72 Total: -22.24 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -28.04 -5.21 -33.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115804287.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.133 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds