Wall clock time and date at job start Thu Apr 9 2020 13:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46945 * 239.99418 * 3 2 1 5 5 H 1.48497 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46999 * 119.99557 * 3 2 1 7 7 C 1.39872 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00431 * 197.96904 * 7 2 1 9 9 C 1.41312 * 119.99970 * 17.97277 * 7 2 1 10 10 C 1.41001 * 120.07835 * 204.62579 * 9 7 2 11 11 C 1.36332 * 120.33689 * 179.73882 * 10 9 7 12 12 C 1.39206 * 120.50614 * 0.56141 * 11 10 9 13 13 O 1.35405 * 119.92187 * 179.71814 * 12 11 10 14 14 C 1.40859 * 120.15001 * 359.44006 * 12 11 10 15 15 C 1.46877 * 120.17178 * 180.29959 * 14 12 11 16 16 O 1.21283 * 120.00241 * 359.97438 * 15 14 12 17 17 C 1.39388 * 119.65707 * 0.27193 * 14 12 11 18 18 H 0.96996 * 120.00461 * 0.02562 * 1 2 3 19 19 H 1.08000 * 119.83212 * 0.04534 * 10 9 7 20 20 H 1.07997 * 119.74607 * 180.29488 * 11 10 9 21 21 H 0.96708 * 114.00009 * 269.72031 * 13 12 11 22 22 H 1.08002 * 119.99895 * 179.97438 * 15 14 12 23 23 H 1.07998 * 120.24505 * 179.97438 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0082 -1.2113 0.0005 8 1 3.0487 -1.2341 0.2891 9 6 1.3534 -2.4054 -0.3765 10 6 1.8272 -3.6488 0.0899 11 6 1.1963 -4.8037 -0.2663 12 6 0.0845 -4.7724 -1.1034 13 8 -0.5296 -5.9271 -1.4543 14 6 -0.4066 -3.5418 -1.5816 15 6 -1.5836 -3.5077 -2.4595 16 8 -2.1350 -4.5408 -2.7750 17 6 0.2298 -2.3566 -1.2167 18 1 -0.4850 0.8400 -0.0004 19 1 2.6913 -3.6862 0.7366 20 1 1.5645 -5.7505 0.1003 21 1 -0.1821 -6.3273 -2.2632 22 1 -1.9581 -2.5626 -2.8242 23 1 -0.1385 -1.4078 -1.5782 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115804287.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:47 Heat of formation + Delta-G solvation = -83.464866 kcal Electronic energy + Delta-G solvation = -11292.028227 eV Core-core repulsion = 9069.442202 eV Total energy + Delta-G solvation = -2222.586025 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.63865 -38.87008 -37.53596 -35.14806 -32.08259 -30.97581 -26.80091 -25.24149 -23.08682 -21.60255 -19.17378 -18.82931 -17.62076 -16.63989 -16.31731 -16.10054 -15.25652 -14.98008 -14.72249 -14.41949 -13.59691 -13.35975 -12.93646 -12.60182 -12.48188 -12.09242 -11.81639 -11.39600 -11.00868 -10.32140 -9.63134 -9.28947 -8.69478 -6.34792 0.04890 0.86714 1.43443 1.47957 1.55318 1.82130 2.22298 2.67093 3.51979 3.57705 3.79489 4.29408 4.54711 4.80628 4.97443 5.11205 5.26450 5.45339 5.58266 5.82686 5.93195 6.13637 6.48895 6.63801 6.79162 6.85290 7.19953 8.28891 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.055797 B = 0.011443 C = 0.009755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.700442 B = 2446.275665 C = 2869.605540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.488 4.488 8 H 0.083 0.917 9 C 0.060 3.940 10 C -0.193 4.193 11 C -0.126 4.126 12 C 0.010 3.990 13 O -0.496 6.496 14 C -0.208 4.208 15 C 0.390 3.610 16 O -0.495 6.495 17 C -0.115 4.115 18 H 0.293 0.707 19 H 0.114 0.886 20 H 0.125 0.875 21 H 0.380 0.620 22 H 0.128 0.872 23 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 1.210 -2.550 3.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.517 4.517 8 H 0.101 0.899 9 C 0.058 3.942 10 C -0.212 4.212 11 C -0.145 4.145 12 C -0.036 4.036 13 O -0.306 6.306 14 C -0.210 4.210 15 C 0.252 3.748 16 O -0.371 6.371 17 C -0.134 4.134 18 H 0.104 0.896 19 H 0.132 0.868 20 H 0.142 0.858 21 H 0.235 0.765 22 H 0.144 0.856 23 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.452 0.919 -2.189 2.783 hybrid contribution 0.626 0.558 -0.140 0.851 sum 2.079 1.478 -2.329 3.454 Atomic orbital electron populations 1.69822 1.08919 1.31201 1.34791 1.26723 0.95479 1.04456 0.91027 0.85220 0.78764 0.75548 0.80063 1.18334 1.19300 1.18628 1.19801 0.98743 0.92007 1.41152 0.89864 1.17985 0.92464 0.93361 0.90433 1.21026 1.03227 0.92416 1.04558 1.20848 0.95249 0.98606 0.99763 1.18481 0.96411 0.84693 1.04013 1.84676 1.62188 1.36554 1.47135 1.21287 1.01086 0.94320 1.04301 1.24284 0.81156 0.93412 0.75923 1.90422 1.55900 1.39595 1.51200 1.21619 0.97557 0.95867 0.98392 0.89586 0.86784 0.85753 0.76504 0.85636 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.26 10.97 21.82 0.24 -39.02 14 2 C 0.04 1.80 5.13 85.23 0.44 2.23 14 3 Si 0.98 34.86 29.60 68.60 2.03 36.89 14 4 H -0.26 -8.98 7.11 99.48 0.71 -8.28 14 5 H -0.27 -9.06 7.11 99.48 0.71 -8.36 14 6 H -0.26 -9.11 7.11 99.48 0.71 -8.41 14 7 C -0.49 -24.11 9.04 23.42 0.21 -23.90 14 8 H 0.08 3.92 7.91 -2.91 -0.02 3.90 14 9 C 0.06 3.01 5.57 -21.32 -0.12 2.89 14 10 C -0.19 -8.90 9.71 22.50 0.22 -8.68 14 11 C -0.13 -5.51 9.90 22.06 0.22 -5.29 14 12 C 0.01 0.44 6.74 23.14 0.16 0.60 14 13 O -0.50 -20.98 11.54 -66.00 -0.76 -21.75 14 14 C -0.21 -9.51 5.88 -20.10 -0.12 -9.63 14 15 C 0.39 15.63 11.44 70.08 0.80 16.43 14 16 O -0.49 -21.74 15.97 17.95 0.29 -21.45 14 17 C -0.11 -5.55 8.44 23.07 0.19 -5.35 14 18 H 0.29 12.61 8.30 -92.71 -0.77 11.84 14 19 H 0.11 4.82 8.06 -2.91 -0.02 4.80 14 20 H 0.12 4.71 8.06 -2.91 -0.02 4.68 14 21 H 0.38 12.77 9.06 -74.05 -0.67 12.10 14 22 H 0.13 4.04 8.06 -2.91 -0.02 4.02 14 23 H 0.13 6.13 6.16 -2.91 -0.02 6.11 14 Total: -1.00 -57.99 216.84 4.36 -53.62 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.57 Total: 22.40 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 2.00 Total: -30.70 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.24 Total: -39.02 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.48 Total: -43.19 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -57.99 4.36 -53.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115804287.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.844 kcal (2) G-P(sol) polarization free energy of solvation -57.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds