Wall clock time and date at job start Thu Apr 9 2020 13:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47366 * 2 1 4 4 C 1.50691 * 109.47125 * 180.02562 * 3 2 1 5 5 N 1.31500 * 119.79991 * 269.97374 * 4 3 2 6 6 C 1.32062 * 121.98684 * 179.67953 * 5 4 3 7 7 C 1.38630 * 121.31014 * 0.64340 * 6 5 4 8 8 C 1.38008 * 119.42639 * 359.39610 * 7 6 5 9 9 C 1.40711 * 119.80201 * 90.00208 * 4 3 2 10 10 C 1.41407 * 120.66114 * 359.97438 * 9 4 3 11 11 H 1.08004 * 120.00017 * 335.03704 * 10 9 4 12 12 C 1.39950 * 120.00531 * 155.04034 * 10 9 4 13 13 N 1.30825 * 119.99515 * 344.21364 * 12 10 9 14 14 Si 1.86796 * 120.00244 * 164.21078 * 12 10 9 15 15 H 1.48493 * 109.47182 * 90.00378 * 14 12 10 16 16 H 1.48508 * 109.46968 * 209.99982 * 14 12 10 17 17 H 1.48494 * 109.47381 * 329.99918 * 14 12 10 18 18 H 1.09010 * 109.47083 * 299.99957 * 1 2 3 19 19 H 1.08999 * 109.47384 * 60.00026 * 1 2 3 20 20 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47127 * 239.99873 * 2 1 3 22 22 H 1.08999 * 109.47384 * 119.99974 * 2 1 3 23 23 H 1.09000 * 109.47101 * 59.99857 * 3 2 1 24 24 H 1.08999 * 109.46847 * 300.00302 * 3 2 1 25 25 H 1.07993 * 119.34508 * 180.31734 * 6 5 4 26 26 H 1.08004 * 120.28478 * 179.67005 * 7 6 5 27 27 H 1.08003 * 120.90600 * 180.29397 * 8 7 6 28 28 H 0.97003 * 119.99754 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4424 -0.0006 5 7 4.2009 1.4428 1.1402 6 6 5.5206 1.4365 1.1901 7 6 6.2852 1.4424 0.0337 8 6 5.6566 1.4426 -1.1949 9 6 4.2458 1.4426 -1.2220 10 6 3.5481 1.4424 -2.4520 11 1 2.5443 1.0473 -2.5033 12 6 4.1584 1.9539 -3.6028 13 7 5.2261 2.7028 -3.4991 14 14 3.4486 1.5674 -5.2869 15 1 2.4527 2.6057 -5.6545 16 1 4.5411 1.5513 -6.2927 17 1 2.7879 0.2380 -5.2524 18 1 -0.3634 0.5139 0.8901 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.6767 1.9564 0.8900 24 1 1.6766 1.9563 -0.8900 25 1 6.0139 1.4318 2.1507 26 1 7.3636 1.4425 0.0938 27 1 6.2289 1.4424 -2.1108 28 1 5.6493 3.0571 -4.2968 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139484560.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:48 Heat of formation + Delta-G solvation = -1.027302 kcal Electronic energy + Delta-G solvation = -11545.460335 eV Core-core repulsion = 9560.000828 eV Total energy + Delta-G solvation = -1985.459507 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.42998 -34.25250 -33.99221 -30.47830 -30.16292 -26.40915 -25.09264 -21.57544 -21.31132 -19.77053 -17.29232 -15.71899 -14.84975 -14.67642 -13.81123 -13.73396 -13.04518 -12.68799 -12.26488 -11.71775 -11.48900 -11.40525 -11.26886 -10.97467 -10.77005 -10.52260 -10.40679 -9.90301 -9.57044 -9.35003 -8.14252 -7.92981 -7.46315 -6.82481 -4.45859 2.65154 2.95628 3.02001 3.06414 3.21404 3.85811 4.61157 5.50326 5.67557 5.71690 5.82966 6.03091 6.27696 6.34159 6.42723 6.57305 6.60134 6.72094 6.74943 6.97618 7.00325 7.12140 7.24362 7.37444 7.77892 7.90901 7.99638 8.46775 8.71112 8.77538 9.71124 10.08701 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.016667 C = 0.010749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.605198 B = 1679.563512 C = 2604.297132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.041 4.041 4 C 0.009 3.991 5 N -0.470 5.470 6 C -0.040 4.040 7 C -0.156 4.156 8 C -0.138 4.138 9 C 0.070 3.930 10 C -0.447 4.447 11 H 0.085 0.915 12 C 0.074 3.926 13 N -0.793 5.793 14 Si 0.909 3.091 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.259 1.259 18 H 0.048 0.952 19 H 0.051 0.949 20 H 0.045 0.955 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -2.465 -0.374 4.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.079 4.079 4 C -0.133 4.133 5 N -0.178 5.178 6 C -0.197 4.197 7 C -0.177 4.177 8 C -0.164 4.164 9 C 0.066 3.934 10 C -0.477 4.477 11 H 0.103 0.897 12 C -0.145 4.145 13 N -0.418 5.418 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.183 1.183 18 H 0.067 0.933 19 H 0.070 0.930 20 H 0.064 0.936 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.134 0.866 26 H 0.114 0.886 27 H 0.143 0.857 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.720 -2.312 0.261 4.388 hybrid contribution 0.516 -0.019 -1.611 1.692 sum -3.204 -2.331 -1.350 4.186 Atomic orbital electron populations 1.21778 0.96894 1.00576 1.01297 1.21454 0.94233 0.97897 1.01760 1.20065 0.90883 0.95763 1.01163 1.20988 0.94718 1.09303 0.88313 1.66760 1.09824 1.10691 1.30500 1.21624 0.89598 1.12111 0.96324 1.21608 0.98613 1.02893 0.94568 1.21670 0.94910 1.03382 0.96476 1.18315 0.92374 0.89608 0.93152 1.19578 1.01484 1.34778 0.91856 0.89668 1.25984 0.94267 0.92561 1.01648 1.69800 1.17479 1.22663 1.31860 0.86289 0.79488 0.80278 0.80638 1.19330 1.20061 1.18299 0.93259 0.92953 0.93593 0.91979 0.92724 0.92826 0.91008 0.86571 0.88582 0.85702 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.15 0.37 -1.86 15 2 C -0.12 -2.16 5.91 -26.73 -0.16 -2.32 15 3 C -0.04 -0.87 4.91 -27.89 -0.14 -1.01 15 4 C 0.01 0.23 6.11 -81.80 -0.50 -0.27 15 5 N -0.47 -11.93 10.25 -8.80 -0.09 -12.02 15 6 C -0.04 -0.95 11.18 -17.31 -0.19 -1.14 15 7 C -0.16 -3.75 10.09 -39.52 -0.40 -4.15 15 8 C -0.14 -3.63 8.80 -38.58 -0.34 -3.97 15 9 C 0.07 1.86 5.58 -106.67 -0.60 1.26 15 10 C -0.45 -11.44 8.16 -37.74 -0.31 -11.75 15 11 H 0.09 2.07 6.62 -52.48 -0.35 1.72 15 12 C 0.07 1.79 5.20 -17.34 -0.09 1.70 15 13 N -0.79 -20.09 10.91 55.55 0.61 -19.48 15 14 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 15 15 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 16 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 17 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 18 H 0.05 0.69 8.14 -51.92 -0.42 0.27 15 19 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.06 1.22 7.91 -51.93 -0.41 0.81 15 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.07 1.54 6.76 -51.93 -0.35 1.18 15 25 H 0.12 2.44 8.06 -52.49 -0.42 2.01 15 26 H 0.10 2.01 8.06 -52.48 -0.42 1.58 15 27 H 0.13 3.31 6.24 -52.48 -0.33 2.98 15 28 H 0.28 6.49 8.30 -40.82 -0.34 6.15 15 LS Contribution 240.58 15.07 3.63 3.63 Total: -1.00 -27.56 240.58 -6.77 -34.33 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -3.53 Total: 3.94 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.35 Total: -23.50 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.52 Total: -31.50 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.56 -6.77 -34.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139484560.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.302 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds