Wall clock time and date at job start Thu Apr 9 2020 13:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48511 * 109.47043 * 269.99997 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 H 1.08996 * 115.54919 * 34.41899 * 12 10 9 14 14 C 1.52999 * 117.49889 * 180.08989 * 12 10 9 15 15 C 1.53003 * 117.50021 * 248.74936 * 12 10 9 16 16 F 1.39900 * 117.49719 * 0.02562 * 15 12 10 17 17 F 1.39900 * 117.50078 * 145.01800 * 15 12 10 18 18 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 19 19 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 20 20 H 1.09000 * 117.49829 * 214.97587 * 14 12 10 21 21 H 1.08998 * 117.50050 * 359.97438 * 14 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 1 0.3059 -4.8645 -0.5533 14 6 2.0658 -6.1533 0.0043 15 6 1.3170 -5.7204 1.2672 16 9 2.0779 -5.2326 2.3350 17 9 0.1753 -6.4469 1.6222 18 1 -0.4850 0.8401 -0.0004 19 1 0.3533 -2.3906 0.0016 20 1 1.6686 -7.0040 -0.5495 21 1 3.1516 -6.0582 0.0048 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464722697.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:42 Heat of formation + Delta-G solvation = -110.463870 kcal Electronic energy + Delta-G solvation = -11669.717914 eV Core-core repulsion = 8989.450257 eV Total energy + Delta-G solvation = -2680.267657 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 191.050 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -48.31542 -46.97654 -38.50936 -35.17092 -33.86921 -31.31231 -25.83075 -23.09479 -22.18538 -19.30148 -18.06803 -17.61249 -16.41810 -15.70639 -15.43274 -14.57317 -14.01347 -13.66954 -13.40634 -13.13032 -13.03025 -12.99713 -11.82337 -11.60650 -11.16096 -10.80057 -10.44720 -10.28993 -9.77371 -9.57637 -8.62047 -8.09130 -6.52415 -3.92761 2.92287 3.22350 3.22870 3.28693 3.33284 4.04258 4.17449 4.42673 4.67315 4.95330 5.17811 5.31531 5.64191 5.88911 6.13233 6.21100 7.45812 7.93151 8.46753 9.05224 9.39822 9.90328 10.64593 Molecular weight = 191.05amu Principal moments of inertia in cm(-1) A = 0.068736 B = 0.009872 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.257447 B = 2835.653563 C = 2958.455826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.544 5.544 10 C 0.459 3.541 11 O -0.586 6.586 12 C -0.168 4.168 13 H 0.135 0.865 14 C -0.147 4.147 15 C 0.205 3.795 16 F -0.153 7.153 17 F -0.166 7.166 18 H 0.274 0.726 19 H 0.395 0.605 20 H 0.121 0.879 21 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 -7.775 -0.181 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.178 5.178 10 C 0.244 3.756 11 O -0.471 6.471 12 C -0.191 4.191 13 H 0.153 0.847 14 C -0.185 4.185 15 C 0.167 3.833 16 F -0.133 7.133 17 F -0.147 7.147 18 H 0.084 0.916 19 H 0.229 0.771 20 H 0.139 0.861 21 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.198 -7.581 -0.127 7.585 hybrid contribution -0.462 0.789 0.213 0.939 sum -0.660 -6.791 0.085 6.824 Atomic orbital electron populations 1.69618 1.06059 1.28572 1.49196 1.25338 0.95681 0.99987 0.96723 0.85792 0.79284 0.80345 0.78511 1.20210 1.20760 1.19231 1.19782 0.93551 0.81960 1.47922 0.87567 1.41807 1.09410 1.04433 1.62155 1.18529 0.87509 0.83440 0.86129 1.90534 1.13326 1.86594 1.56680 1.23666 1.03154 0.94323 0.97908 0.84700 1.24192 1.02403 0.97267 0.94641 1.19897 0.83716 0.98824 0.80825 1.93051 1.74370 1.87870 1.58013 1.92997 1.50407 1.77842 1.93416 0.91559 0.77138 0.86093 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 13.05 55.50 0.72 -23.37 14 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 14 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 14 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 14 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 14 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 14 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 14 8 H 0.11 3.08 7.16 -52.48 -0.38 2.70 14 9 N -0.54 -13.95 5.29 -10.96 -0.06 -14.01 14 10 C 0.46 11.01 7.20 -10.99 -0.08 10.93 14 11 O -0.59 -15.95 15.83 5.55 0.09 -15.86 14 12 C -0.17 -3.03 6.17 -91.77 -0.57 -3.60 14 13 H 0.14 2.04 8.14 -51.93 -0.42 1.61 14 14 C -0.15 -2.20 10.02 -26.69 -0.27 -2.47 14 15 C 0.21 3.59 5.20 -26.69 -0.14 3.45 14 16 F -0.15 -3.11 17.13 2.25 0.04 -3.07 14 17 F -0.17 -2.71 17.60 2.25 0.04 -2.67 14 18 H 0.27 6.96 8.31 -40.82 -0.34 6.62 14 19 H 0.39 9.65 7.90 -40.82 -0.32 9.33 14 20 H 0.12 1.33 8.14 -51.93 -0.42 0.91 14 21 H 0.13 2.08 7.67 -51.93 -0.40 1.68 14 LS Contribution 210.86 15.07 3.18 3.18 Total: -1.00 -30.41 210.86 -3.38 -33.80 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -1.08 Total: 5.93 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.29 Total: 0.34 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.67 Total: -37.38 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.86 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.08 Total: -5.74 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -30.41 -3.38 -33.80 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464722697.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.668 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds