Wall clock time and date at job start Thu Apr 9 2020 13:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32093 * 119.33630 * 2 1 4 4 C 1.31468 * 121.98082 * 179.97438 * 3 2 1 5 5 C 1.40754 * 120.40334 * 359.97438 * 4 3 2 6 6 C 1.41402 * 120.66785 * 180.02562 * 5 4 3 7 7 H 1.08004 * 120.00647 * 150.04631 * 6 5 4 8 8 C 1.39950 * 119.99874 * 330.04336 * 6 5 4 9 9 N 1.30821 * 120.00416 * 162.11918 * 8 6 5 10 10 Si 1.86803 * 119.99750 * 342.12145 * 8 6 5 11 11 H 1.48497 * 109.47182 * 95.38727 * 10 8 6 12 12 H 1.48508 * 109.46959 * 215.38449 * 10 8 6 13 13 H 1.48494 * 109.47265 * 335.38138 * 10 8 6 14 14 C 1.41073 * 118.67059 * 359.97438 * 5 4 3 15 15 C 1.50702 * 120.89969 * 179.97438 * 14 5 4 16 16 C 1.38054 * 118.19960 * 0.02562 * 14 5 4 17 17 C 1.50697 * 120.28890 * 180.02562 * 16 14 5 18 18 H 1.09000 * 109.46732 * 90.01001 * 1 2 3 19 19 H 1.09001 * 109.47003 * 210.00095 * 1 2 3 20 20 H 1.08995 * 109.47510 * 330.00290 * 1 2 3 21 21 H 1.08000 * 119.80712 * 180.02562 * 4 3 2 22 22 H 0.96998 * 120.00315 * 179.97438 * 9 8 6 23 23 H 1.09007 * 109.46660 * 90.00352 * 15 14 5 24 24 H 1.08997 * 109.47087 * 210.00027 * 15 14 5 25 25 H 1.08996 * 109.47316 * 330.00669 * 15 14 5 26 26 H 1.09001 * 109.47213 * 89.99649 * 17 16 14 27 27 H 1.08999 * 109.47206 * 209.99927 * 17 16 14 28 28 H 1.09002 * 109.47555 * 330.00165 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1542 1.1515 0.0000 4 6 3.4674 1.2122 0.0005 5 6 4.2350 0.0324 0.0016 6 6 5.6478 0.0911 0.0027 7 1 6.2208 -0.6959 0.4704 8 6 6.3038 1.1691 -0.6025 9 7 7.5551 1.4189 -0.3139 10 14 5.3926 2.2514 -1.8222 11 1 4.8530 3.4432 -1.1197 12 1 6.3267 2.6876 -2.8911 13 1 4.2738 1.4837 -2.4257 14 6 3.5666 -1.2100 0.0027 15 6 4.3387 -2.5042 0.0033 16 6 2.1861 -1.2080 0.0021 17 6 1.4242 -2.5082 0.0038 18 1 -0.3633 -0.0002 -1.0277 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8899 0.5138 21 1 3.9605 2.1731 0.0009 22 1 8.0099 2.1658 -0.7337 23 1 4.5251 -2.8155 1.0312 24 1 3.7604 -3.2725 -0.5097 25 1 5.2890 -2.3606 -0.5108 26 1 1.2401 -2.8201 1.0319 27 1 0.4728 -2.3725 -0.5106 28 1 2.0085 -3.2725 -0.5085 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213799239.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:23 Heat of formation + Delta-G solvation = 4.006778 kcal Electronic energy + Delta-G solvation = -11703.437931 eV Core-core repulsion = 9718.196718 eV Total energy + Delta-G solvation = -1985.241213 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.99863 -34.26495 -33.34244 -32.18301 -28.40583 -27.70551 -25.54893 -23.96627 -20.79160 -19.56394 -17.38937 -15.86466 -15.13612 -14.36250 -13.89423 -13.22004 -12.89108 -12.56261 -12.27980 -12.17792 -11.99709 -11.79908 -11.45884 -11.13555 -10.95410 -10.87246 -10.67246 -10.16982 -9.91581 -9.29422 -8.15475 -8.00751 -7.51996 -7.03756 -4.55693 2.42701 2.57203 3.10375 3.18110 3.28986 3.92366 4.45857 5.29093 5.58773 5.71427 5.80419 5.98012 6.03874 6.10961 6.25904 6.30562 6.40606 6.48026 6.52112 6.58186 6.75459 6.85694 6.99202 7.26675 7.45832 7.61598 7.95634 8.19331 8.47931 8.64915 9.46489 9.97138 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.043598 B = 0.015095 C = 0.012029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.079181 B = 1854.513232 C = 2327.105416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.014 4.014 3 N -0.458 5.458 4 C -0.028 4.028 5 C 0.045 3.955 6 C -0.433 4.433 7 H 0.095 0.905 8 C 0.085 3.915 9 N -0.801 5.801 10 Si 0.907 3.093 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.248 1.248 14 C -0.150 4.150 15 C -0.090 4.090 16 C -0.098 4.098 17 C -0.105 4.105 18 H 0.050 0.950 19 H 0.056 0.944 20 H 0.056 0.944 21 H 0.129 0.871 22 H 0.287 0.713 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 -3.822 -1.232 7.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.152 4.152 3 N -0.166 5.166 4 C -0.189 4.189 5 C 0.040 3.960 6 C -0.462 4.462 7 H 0.113 0.887 8 C -0.135 4.135 9 N -0.424 5.424 10 Si 0.733 3.267 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.171 1.171 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.100 4.100 17 C -0.163 4.163 18 H 0.069 0.931 19 H 0.074 0.926 20 H 0.075 0.925 21 H 0.146 0.854 22 H 0.098 0.902 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.393 -2.955 -1.238 7.151 hybrid contribution 0.423 -0.098 -0.485 0.651 sum -5.970 -3.053 -1.723 6.923 Atomic orbital electron populations 1.20319 0.91436 1.01059 1.00520 1.20187 0.94940 0.88055 1.11977 1.66782 1.10747 1.29286 1.09748 1.22442 0.88927 0.97203 1.10358 1.18504 0.94609 0.91534 0.91307 1.19410 0.89829 1.06178 1.30767 0.88687 1.26152 0.94919 0.96155 0.96281 1.69672 1.11672 1.25941 1.35143 0.86381 0.79801 0.80429 0.80076 1.19089 1.21399 1.17120 1.19938 0.92142 0.94918 1.08757 1.20470 0.99798 0.93869 1.00496 1.20056 0.93763 0.94931 1.01253 1.20725 0.99270 0.95156 1.01101 0.93126 0.92555 0.92519 0.85366 0.90206 0.93162 0.93261 0.91473 0.92245 0.92333 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 9.35 36.01 0.34 -1.00 15 2 C -0.01 -0.32 6.79 -82.35 -0.56 -0.88 15 3 N -0.46 -11.53 10.24 -8.78 -0.09 -11.62 15 4 C -0.03 -0.72 8.37 -16.76 -0.14 -0.86 15 5 C 0.05 1.17 5.11 -106.67 -0.55 0.62 15 6 C -0.43 -11.52 8.62 -37.74 -0.33 -11.84 15 7 H 0.10 2.60 7.33 -52.48 -0.38 2.21 15 8 C 0.08 2.20 5.41 -17.34 -0.09 2.10 15 9 N -0.80 -20.90 13.93 55.55 0.77 -20.12 15 10 Si 0.91 21.03 24.53 -169.99 -4.17 16.86 15 11 H -0.27 -6.04 6.72 56.52 0.38 -5.66 15 12 H -0.29 -6.32 7.11 56.52 0.40 -5.91 15 13 H -0.25 -6.08 6.85 56.52 0.39 -5.69 15 14 C -0.15 -3.50 5.97 -103.61 -0.62 -4.12 15 15 C -0.09 -1.77 9.11 36.01 0.33 -1.44 15 16 C -0.10 -2.12 5.89 -104.57 -0.62 -2.73 15 17 C -0.11 -1.73 8.81 36.00 0.32 -1.41 15 18 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 19 H 0.06 0.85 6.66 -51.93 -0.35 0.51 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.13 3.30 4.75 -52.49 -0.25 3.05 15 22 H 0.29 6.79 8.30 -40.82 -0.34 6.45 15 23 H 0.05 0.93 8.14 -51.92 -0.42 0.51 15 24 H 0.05 0.83 6.07 -51.93 -0.32 0.52 15 25 H 0.07 1.37 6.98 -51.93 -0.36 1.01 15 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.06 0.86 6.69 -51.93 -0.35 0.51 15 28 H 0.06 0.93 6.06 -51.93 -0.31 0.62 15 LS Contribution 228.20 15.07 3.44 3.44 Total: -1.00 -28.31 228.20 -5.14 -33.46 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.18 Total: -0.45 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.92 Total: -21.56 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.68 Total: -31.75 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.17 Total: 16.86 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.31 -5.14 -33.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213799239.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.463 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds